BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0013.p (212 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309377|ref|YP_003773469.1| ABC transporter ATPase [Herbasp... 421 e-119 gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC transpo... 56 2e-09 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 55 4e-09 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 54 8e-09 >gi|300309377|ref|YP_003773469.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 212 Score = 421 bits (1081), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/212 (98%), Positives = 211/212 (99%) Query: 1 MTQASDRTALLLVSRLNFSYPGLDLFQDFSARIAPGVTLVRGGDGRGKTTLLNLLAGLMP 60 MTQASDRTALLLVSRLNFSYPGLDLFQDFSARI PG+TLVRGGDGRGKTTLLNLLAGLMP Sbjct: 1 MTQASDRTALLLVSRLNFSYPGLDLFQDFSARITPGLTLVRGGDGRGKTTLLNLLAGLMP 60 Query: 61 VRDGVLELDGLRLDSEAENFRRQVFFIDPRSEAYEQMTPPEVFAALAERYPHFDHARLPA 120 VRDGVLELDGLRLDSEAEN+RRQVFFIDPRSEAYEQMTPPEVFAALAER+PHFDHARLPA Sbjct: 61 VRDGVLELDGLRLDSEAENYRRQVFFIDPRSEAYEQMTPPEVFAALAERHPHFDHARLPA 120 Query: 121 LTEGLSLTPHLEKKLFMLSTGSKRKVYLAAAFAAQATLTLLDDPYASLDRASINFVAAML 180 LTEGLSLTPHLEKKLFMLSTGSKRKVYLAAAFAAQATLTLLDDPYASLDRASINFVAAML Sbjct: 121 LTEGLSLTPHLEKKLFMLSTGSKRKVYLAAAFAAQATLTLLDDPYASLDRASINFVAAML 180 Query: 181 NAHAEDARQAWVVAMYETPEAIRLAGTIDLGD 212 NAHAEDARQAWVVAMYETPEAIRLAGTIDLGD Sbjct: 181 NAHAEDARQAWVVAMYETPEAIRLAGTIDLGD 212 >gi|300312811|ref|YP_003776903.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 56.2 bits (134), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 12/167 (7%) Query: 20 YPGLDLFQDFSARIAPG-VTLVRGGDGRGKTTLLNLLAGLMPVRDGVLELDGLRLDSEAE 78 Y + +A IA G V +V G G GK+TL+ + L P+++G + +DG++++ + Sbjct: 11 YGDFKVLSACNAVIAKGEVVVVCGPSGSGKSTLIKTINALEPIQEGSITIDGVKVNDRST 70 Query: 79 NFRR---------QVFFIDPRSEAYEQMTPPEVFAALAERYPHFDHARLPALTEGLSLTP 129 N R Q F + P + +T ++ + R H E + L Sbjct: 71 NLPRLRSRVGMVFQHFELFPHLTIIQNLTLAQI--KVLGRKKDEAHQHGMKYLERVGLKA 128 Query: 130 HLEKKLFMLSTGSKRKVYLAAAFAAQATLTLLDDPYASLDRASINFV 176 H K LS G +++V +A A A L D+P ++LD +N V Sbjct: 129 HAGKYPGQLSGGQQQRVAIARALAMDPICMLFDEPTSALDPEMVNEV 175 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 55.5 bits (132), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 12/194 (6%) Query: 10 LLLVSRLNFSYPGLDLFQDFSARIAPG-VTLVRGGDGRGKTTLLNLLAGLMPVRDGVLEL 68 ++ V R++ + ++ +D S +A G V + G G GK+T+L + GL G + + Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 69 DGLRLDSEAENFRR---------QVFFIDPRSEAYEQMTPPEVFAALAERYPHFDHARLP 119 DG R+D + + R Q F + P E +T ++ R A Sbjct: 61 DGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARSEAM-- 118 Query: 120 ALTEGLSLTPHLEKKLFMLSTGSKRKVYLAAAFAAQATLTLLDDPYASLDRASINFVAAM 179 +L + + L + LS G +++V +A + A Q L D+P ++LD + V A+ Sbjct: 119 SLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAV 178 Query: 180 LNAHAEDARQAWVV 193 + A D VV Sbjct: 179 MRTLAADGMTMIVV 192 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 54.3 bits (129), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 21/169 (12%) Query: 26 FQDFSARIAPG--VTLVRGGDGRGKTTLLNLLAGLMPVRDGVLELDGLRLDSEAENFRRQ 83 ++ + +A G VTL+ G G GK+TLLNL+AGL+ +GVL + A R Sbjct: 30 LREINLTVAKGEFVTLI-GHSGCGKSTLLNLIAGLLKPSEGVLLCANREIGGPAP--ERA 86 Query: 84 VFFID----PRSEAYEQ--MTPPEVFAALAERYPHFDHARLPALTEGLSLTPHLEKKLFM 137 V F + P YE + VF A R D R GLS + K+ Sbjct: 87 VVFQNHSLLPWLSCYENIYLGVERVFGATENRTQLRDRTRAALALVGLSAAEN--KRPNE 144 Query: 138 LSTGSKRKVYLAAAFAAQATLTLLDDPYASLDRASINFVAAMLNAHAED 186 +S G K++V +A A A + + L+D+P+ +LD A+ AH +D Sbjct: 145 ISGGMKQRVGIARALAMEPKVLLMDEPFGALD--------ALTRAHLQD 185 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 636,202 Number of extensions: 24817 Number of successful extensions: 313 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 332 Number of HSP's successfully gapped: 11 Length of query: 212 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 131 Effective length of database: 1,236,335 Effective search space: 161959885 Effective search space used: 161959885 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)