BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0001.p
         (508 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312215|ref|YP_003776307.1| hypothetical protein Hsero_2909...   137   2e-33

>gi|300312215|ref|YP_003776307.1| hypothetical protein Hsero_2909
           [Herbaspirillum seropedicae SmR1]
          Length = 531

 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 134/526 (25%), Positives = 230/526 (43%), Gaps = 60/526 (11%)

Query: 1   VDEYPLAGDLGIDGVVYVKQSTEKRPGW-GPVLDEVTGRVVPGLANRSSSAVLLLRVDGD 59
           V  +PL   +  +G  +   S  + P W   + + +     P L ++S   +L +  +G 
Sbjct: 34  VGSFPLTETIP-EGRFFALPSEAEPPKWMAAISNLLPADATPQLESQSPGGLLWIPRNGK 92

Query: 60  VFAFTFGYGRYLIEQSLFVQDFGLRAALNTLDENSLRSVDLHTIEDQPVQKKSQAARDSA 119
            F FTFG+G   I+      +FG   AL  + +  +R V    +  +      +A R SA
Sbjct: 93  TFVFTFGHGHSKIKDEWVEPEFGKIVALAIVPQGQVREVRAEQVFAKRHISSERAPRASA 152

Query: 120 VGVFGIDILRDVLRAVTGVPK---SGVGLTQISGGDSMFSFSIDMEA--ADFPELARRAK 174
           V  FG +  RD++ AV GVP+    GV  T++ GG S+  F ID  A  A   ++  R  
Sbjct: 153 VREFGFEADRDLVSAVEGVPELLYRGVFGTKVRGGMSI-KFEIDTTAILATLDQIIER-- 209

Query: 175 GYYENDDYKTSFSWVDNVRKLKDDASIDALNAQLIQAISTRNPGIMVTLPEIGVWDTILG 234
             ++++D++  +   +N+  ++D+ ++  L   L   +  R+P   ++L   G       
Sbjct: 210 --FDSNDHRVRWPQANNLVHVRDETTLSHLETLLDGILGGRDPQREISLAAPG------- 260

Query: 235 FSFTRNKDGIRPVIQ------AGDYIDTIPDLANLTIEGLKRDR-----------LFVHD 277
                 + G +P  Q            T P L   + +G  R +             VH 
Sbjct: 261 -----ERSGDKPYPQHFVIGRMNANAATSPYLMFASWQGHARSKGQPPNLETAKSTAVHL 315

Query: 278 VDGNITE---HSVYRCIYFEIADGDKTKIIFDGKWYEVDAIFIGRIAATLNLVQISSLVF 334
           +D N  E    ++Y C+  EI     T ++  G WY  D  FI  +     L QI   +F
Sbjct: 316 LDENKEEIGVCTIYSCMGAEITHNGITYVLSSGSWYVADQNFI--VGTNRVLGQIDPPMF 373

Query: 335 PSVEIWDEEGKSKIESEGDYN-IRAAATLGYFLLDKKLVKTDRTTSPIELCDLLT-PAKQ 392
            +++ W+      ++ EG YN   AAA +  +L DK+LV      S  E CD++  P+K 
Sbjct: 374 -ALQAWN-----SLDHEGPYNEAAAAADVDLWLFDKELVSYGGGRSRFEFCDIMHLPSKT 427

Query: 393 LIHVKHRKGGSAGLSHLFAQGGVAAEIML-GDKAFRKKARTVLRGVNPAARDLIPLDGVR 451
           L  VKH   GSAG+SHL  Q    AE     D A+R+   + +  +          +  +
Sbjct: 428 LYFVKH-PAGSAGVSHLCEQVRRTAETFFDTDPAYRQILESRIGALGKGWNTSWLRERPK 486

Query: 452 TADYEIVFLILGEGSATLKQNLPFFSKVNLAKTFENLTQRGFRVTI 497
             ++ +  +++G+        LPFF+K  +++    L +RGF ++ 
Sbjct: 487 RHEWNLCLVLMGK----QLNELPFFAKCGISRLVGELQKRGFNLSF 528


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,573,960
Number of extensions: 65956
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 2
Length of query: 508
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 419
Effective length of database: 1,198,455
Effective search space: 502152645
Effective search space used: 502152645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)