BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0323.p
         (257 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313588|ref|YP_003777680.1| transcription regulation access...   517   e-148

>gi|300313588|ref|YP_003777680.1| transcription regulation accessory
           factor transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score =  517 bits (1332), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MLLIDAGNTRIKWAVPSDHPQREGRWRQQGAVARGELQSLAQAWAALDRPQRICVSNVAG 60
           MLLIDAGNTRIKWAVPSDHPQREGRWRQQGAVARGELQSLAQAWAALDRPQRICVSNVAG
Sbjct: 2   MLLIDAGNTRIKWAVPSDHPQREGRWRQQGAVARGELQSLAQAWAALDRPQRICVSNVAG 61

Query: 61  PALRESLQQLLQQVFGSGPVIEWFASTLERAGLRNGYRDPARLGCDRFAAAIGARALYPD 120
           PALRESLQQLLQQVFGSGPVIEWFASTLERAGLRNGYRDPARLGCDRFAAAIGARALYPD
Sbjct: 62  PALRESLQQLLQQVFGSGPVIEWFASTLERAGLRNGYRDPARLGCDRFAAAIGARALYPD 121

Query: 121 EELLVATCGTATTIDVVSAQGVFEGGMILPGFGTMATSLALNTAQLPQIDEVTPLAGIFA 180
           EELLVATCGTATTIDVVSAQGVFEGGMILPGFGTMATSLALNTAQLPQIDEVTPLAGIFA
Sbjct: 122 EELLVATCGTATTIDVVSAQGVFEGGMILPGFGTMATSLALNTAQLPQIDEVTPLAGIFA 181

Query: 181 DNTVEAIVSGCIAAQVGAIEHALAARERAHPHTARRCLLAGGAGLVLAPYLVLGETPLEK 240
           DNTVEAIVSGCIAAQVGAIEHALAARERAHPHTARRCLLAGGAGLVLAPYLVLGETPLEK
Sbjct: 182 DNTVEAIVSGCIAAQVGAIEHALAARERAHPHTARRCLLAGGAGLVLAPYLVLGETPLEK 241

Query: 241 VDNLVLIGLHTAMNHAG 257
           VDNLVLIGLHTAMNHAG
Sbjct: 242 VDNLVLIGLHTAMNHAG 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 819,520
Number of extensions: 33016
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,226,865
Effective search space: 213474510
Effective search space used: 213474510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)