BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0320.p
         (295 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313585|ref|YP_003777677.1| hypothetical protein Hsero_4300...   582   e-168
gi|300313747|ref|YP_003777839.1| hypothetical protein Hsero_4465...    90   2e-19

>gi|300313585|ref|YP_003777677.1| hypothetical protein Hsero_4300
           [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score =  582 bits (1501), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 292/295 (98%), Positives = 293/295 (99%)

Query: 1   LTWLSCLNWLSPAQAAETTTEAPPRGALYEVSDGRHTLLLFGTIHVGAPDFYPLEPRLRQ 60
           LTWLSCLNWLSPAQAAETTTEAPPRGALYEVSDGRHTLLLFGTIHVGAPDFYPLEPRLRQ
Sbjct: 9   LTWLSCLNWLSPAQAAETTTEAPPRGALYEVSDGRHTLLLFGTIHVGAPDFYPLEPRLRQ 68

Query: 61  ALAAAPVLALELDPQNAAAMQEAVQRHGLYPPGQHLLDQLAPPLRQRTMATLQRLGLPEQ 120
           ALAAAPVLALELDPQNAAAMQEA QRHGLYPPGQHLLDQLAPPLRQRTMATLQRLGLPEQ
Sbjct: 69  ALAAAPVLALELDPQNAAAMQEAAQRHGLYPPGQHLLDQLAPPLRQRTMATLQRLGLPEQ 128

Query: 121 GVQNLRPWMLALALTVQEYARHGYQSALAVDSHLAASVRAHGGQILELESAERQMRLFSQ 180
           GVQNLRPWMLALALTVQEYARHGYQSALAVDSHLAASVRAHGGQILELESAERQMRLFSQ
Sbjct: 129 GVQNLRPWMLALALTVQEYARHGYQSALAVDSHLAASVRAHGGQILELESAERQMRLFSQ 188

Query: 181 LSDAQQAQFLDDTLKELQDSHLNRRIDTLVDAWRHADSAGLASALRELQEDDSFTSRFTL 240
           LSDAQQAQFLDDTLKELQDSHLNRRIDTLVDAWRHADSAGLASALRELQEDDSFTSRFTL
Sbjct: 189 LSDAQQAQFLDDTLKELQDSHLNRRIDTLVDAWRHADSAGLASALRELQEDDSFTSRFTL 248

Query: 241 KNLLQDRNPGLATGIAALLRRQDKAVTGIGILHLTGPDSVPALLAKQGLQVRQLY 295
           KNLL+DRNPGLATGIAALLRRQDKAV GIGILHLTGPDSVPALLAKQGLQVRQLY
Sbjct: 249 KNLLRDRNPGLATGIAALLRRQDKAVAGIGILHLTGPDSVPALLAKQGLQVRQLY 303


>gi|300313747|ref|YP_003777839.1| hypothetical protein Hsero_4465
           [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 124/279 (44%), Gaps = 27/279 (9%)

Query: 23  PPRGALYEVSDGRHTLLLFGTIHVGAPDFYPLEPRLRQALAAAPVLALELD---PQNAAA 79
           P RG L+E+S   H   L+GTIH+   ++    P + +AL +A  + +E+D   P  AA 
Sbjct: 50  PDRGPLWEISKDGHLSYLYGTIHLARLEWDFPGPTILKALRSARTVVVEMDITRPGMAAT 109

Query: 80  MQEAVQRHGLYPPGQHLLDQLAPPLRQRTMA-TLQRLGLPEQGVQNLRPWMLA---LALT 135
           M        L P  Q   D ++ PL Q  +A T Q+L       +N +   LA    +LT
Sbjct: 110 M--------LAPMPQQAAD-VSSPLYQSLLARTDQQLRKACADPENFKGASLASKMASLT 160

Query: 136 VQEYARHGYQSALAVDSHLAASVRAHGGQILELESAERQMRLFSQLSDAQQAQFLDDTLK 195
           +    R G  +  A+D+ L    R     I+ELE    Q R+ SQ   A   + LDD   
Sbjct: 161 LLSARRRGLYADFAIDAALIGFARYTRKDIIELEQPSDQRRVISQTQLASLERNLDD--- 217

Query: 196 ELQDSHLNRRIDTLVDAWRHADSAGLASALRELQEDDSFTSRFTLKNLLQDRNPGLATGI 255
            ++       +  L  AW   D  G+A   ++LQ           +   + RN   A GI
Sbjct: 218 -VESGKTEDDLSALALAWERGDMGGIAELCKQLQCQGE-------QQYYEQRNKVFAAGI 269

Query: 256 AALLRRQDKAVTGIGILHLTGPDSVPALLAKQGLQVRQL 294
           A  +     A  G+G LH+ GPDSV   L   G +VRQ+
Sbjct: 270 AKAMAGPGPAFIGVGFLHMLGPDSVIDQLRAMGFEVRQV 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 865,294
Number of extensions: 31965
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 295
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,217,395
Effective search space: 255652950
Effective search space used: 255652950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)