BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0312.p (530 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294... 902 0.0 gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily prot... 467 e-133 >gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294 [Herbaspirillum seropedicae SmR1] Length = 532 Score = 902 bits (2331), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/532 (98%), Positives = 524/532 (98%), Gaps = 2/532 (0%) Query: 1 MANREDLAIIRAARAGQAAAQLTLGKRYLFGGNGLPQSLSTAFHWLERAARQELADAWML 60 MANREDLAIIRAARAGQAAAQLTLGKRYLFGGNGLPQSLSTAFHWLERAARQELADAWML Sbjct: 1 MANREDLAIIRAARAGQAAAQLTLGKRYLFGGNGLPQSLSTAFHWLERAARQELADAWML 60 Query: 61 IAEHIPYEVVVTLTRPQEAAQWYERAFEGGVTKAGLVFARLVLESAGEPGAELKARAIRV 120 IAEHIPYEVVVTLTRPQEAAQWYERAFEGG+TKAGL FARLVLESAGEPGAELKARAIRV Sbjct: 61 IAEHIPYEVVVTLTRPQEAAQWYERAFEGGMTKAGLAFARLVLESAGEPGAELKARAIRV 120 Query: 121 LQVVAREGDPDAQWLLARQGSQPAEPAASAAVAAPAPDLPP--EDLQQWTQKAADAGIEQ 178 LQVVAREGDPDAQWLLARQGSQPAEPAASAAVAAPAP EDLQQWTQKAADAGIEQ Sbjct: 121 LQVVAREGDPDAQWLLARQGSQPAEPAASAAVAAPAPAPDLPPEDLQQWTQKAADAGIEQ 180 Query: 179 AQHALADAAWQQADLIQFAQRAQPLADKLLRQYEALVAQLNGPAESLATALGPQNIVLLR 238 AQHALADAAWQQADLIQF QRAQPLADKLLRQYEALVAQLNGPAE+LATALGPQNIVLLR Sbjct: 181 AQHALADAAWQQADLIQFRQRAQPLADKLLRQYEALVAQLNGPAEALATALGPQNIVLLR 240 Query: 239 RLAQVHLGEKRADLQQAQQLLELAALACDRDAQLALGLLYGRVDEQGVRCFPGLGSANYK 298 RLAQVHLGEKRADLQQAQQLLELAALACDRDAQLALGLLYGRVDEQGVRCFPGLGSANYK Sbjct: 241 RLAQVHLGEKRADLQQAQQLLELAALACDRDAQLALGLLYGRVDEQGVRCFPGLGSANYK 300 Query: 299 KAIRWLTLAGEQGMAAAWYVLSRIYLKPEFSQRNLADVQHYLERAAEMGHVAAQLECGIG 358 KAIRWLTLAGEQGMAAAWYVLSRIYLKPEFSQRNLADVQHYLERAAEMGHVAAQLECGIG Sbjct: 301 KAIRWLTLAGEQGMAAAWYVLSRIYLKPEFSQRNLADVQHYLERAAEMGHVAAQLECGIG 360 Query: 359 AWRNRRDEAGNDVRALYWLQKAASQGDEQAQALLDKVADRPQAAAWAVLARAQLTREQVN 418 AWRNRRDEAGNDVRALYWLQKAASQGDEQAQALLDKVADRPQAAAWAVLARAQLTREQVN Sbjct: 361 AWRNRRDEAGNDVRALYWLQKAASQGDEQAQALLDKVADRPQAAAWAVLARAQLTREQVN 420 Query: 419 AHPFLAARIELATLFGLTRPEALLIDLKQADRGHCLMVDIRSQYARSKRRLIMVENGEQR 478 AHPFLAARIELATLFGLTRPEALLIDLKQADRGHCLMVDIRSQYARSKRRLIMVENGEQR Sbjct: 421 AHPFLAARIELATLFGLTRPEALLIDLKQADRGHCLMVDIRSQYARSKRRLIMVENGEQR 480 Query: 479 GALNRIGRLFEDVDCGPSGPEGNYRQRLYRLKTVLPQSDEEEEREERQDLAA 530 GALNRIGRLFEDVDCGPSGPEGNYRQRLYRLKTVLPQSDEEEEREERQDLAA Sbjct: 481 GALNRIGRLFEDVDCGPSGPEGNYRQRLYRLKTVLPQSDEEEEREERQDLAA 532 >gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily protein [Herbaspirillum seropedicae SmR1] Length = 513 Score = 467 bits (1202), Expect = e-133, Method: Compositional matrix adjust. Identities = 272/518 (52%), Positives = 342/518 (66%), Gaps = 12/518 (2%) Query: 1 MANREDLAIIRAARAGQAAAQLTLGKRYLFGGNGLPQSLSTAFHWLERAARQELADAWML 60 MA RE+LA+I+AARAG++ AQL LG+RYL GG+GLP+S TAF+WL RAA+Q + DAWM+ Sbjct: 1 MATREELAVIKAARAGESRAQLALGRRYLNGGSGLPRSKGTAFYWLRRAAQQGVDDAWMI 60 Query: 61 IAEHIPYEVVVTLTRPQEAAQWYERAFEGGVTKAGLVFARLVLESAGEPGAELKARAIRV 120 I +I YE V L+ P+EAA WYE+AFE GV +AGL+FARLVL++ E + ARAI Sbjct: 61 IGRNITYEQVKELSPPREAAVWYEKAFEAGVPQAGLIFARLVLDNTSEFDSNTHARAIAA 120 Query: 121 LQVVAREGDPDAQWLLARQ---GSQPAEPAASAAVAAPAPDLPPEDLQQWTQKAADAGIE 177 L ++A D +AQWLLA+Q QP P A+AA A L E AA AGIE Sbjct: 121 LSLLASRDDHEAQWLLAQQMQRHGQPMLPGAAAASPAYEDKLMLE--------AARAGIE 172 Query: 178 QAQHALADAAWQQADLIQFAQRAQPLADKLLRQYEALVAQLNGPAE-SLATALGPQNIVL 236 +AQ+A+ D AWQQ D FA+ AQ + +LL ++ VAQL + A L + L Sbjct: 173 EAQYAVLDKAWQQGDEASFARGAQRVTQRLLARHANAVAQLEKDGQIHGAVQLSDEEATL 232 Query: 237 LRRLAQVHLGEKRADLQQAQQLLELAALACDRDAQLALGLLYGRVDEQGVRCFPGLGSAN 296 L R Q L D + Q L ELAA+ + A L LGLL ++D QG R F G AN Sbjct: 233 LLRYGQWRLRGASPDPDELQILFELAAMGGNAQACLELGLLCAKIDRQGERIFMEHGLAN 292 Query: 297 YKKAIRWLTLAGEQGMAAAWYVLSRIYLKPEFSQRNLADVQHYLERAAEMGHVAAQLECG 356 +KKA+ WL AGE G+A W+ L+RIY + +SQRNL QHYLE+AA+ G V AQ E Sbjct: 293 FKKALHWLERAGEAGVAQGWHALARIYSRSIYSQRNLQVAQHYLEKAAQAGLVEAQCELA 352 Query: 357 IGAWRNRRDEAGNDVRALYWLQKAASQGDEQAQALLDKVADRPQAAAWAVLARAQLTREQ 416 WR+RRD+ NDV+ALYW Q+AA+QG+ AQA LD A +P A WA+ A+A LT + Sbjct: 353 QVCWRHRRDDPLNDVKALYWWQQAAAQGEPTAQAALDAFAAQPDAQGWALQAQALLTDKL 412 Query: 417 VNAHPFLAARIELATLFGLTRPEALLIDLKQADRGHCLMVDIRSQYARSKRRLIMVENGE 476 N+ PFL+ARIELA FGLT+PEALLID+K AD GHCL+VDI + +ARSKRRLI V+ Sbjct: 413 RNSSPFLSARIELAATFGLTKPEALLIDIKAADYGHCLVVDICAHHARSKRRLIAVQTDA 472 Query: 477 QRGALNRIGRLFEDVDCGPSGPEGNYRQRLYRLKTVLP 514 QR LNR+ RLF DVDCG G EGNYRQR YRL+T P Sbjct: 473 QRATLNRVSRLFGDVDCGFDGLEGNYRQRQYRLRTTFP 510 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.132 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,410,677 Number of extensions: 53308 Number of successful extensions: 266 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 239 Number of HSP's successfully gapped: 2 Length of query: 530 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 440 Effective length of database: 1,193,720 Effective search space: 525236800 Effective search space used: 525236800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)