BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0295.p (1199 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido... 2468 0.0 gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido... 1365 0.0 >gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1199 Score = 2468 bits (6397), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1191/1199 (99%), Positives = 1193/1199 (99%) Query: 1 MNAPLPAGQRLLLDDVSLDDKYTLERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFIT 60 MNAPLPAGQRLLLDDVSLDDKYTLERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFIT Sbjct: 1 MNAPLPAGQRLLLDDVSLDDKYTLERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFIT 60 Query: 61 GYRGSPLGAVDQTAEKARKYLEAKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFS 120 GYRGSPLGAVDQTAEKARKYLEAKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFS Sbjct: 61 GYRGSPLGAVDQTAEKARKYLEAKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFS 120 Query: 121 LWYGKGPGVDRCGDVFKHTNMAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPV 180 LWYGKGPGVDRCGDVFKH NMAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPV Sbjct: 121 LWYGKGPGVDRCGDVFKHANMAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPV 180 Query: 181 LYPSSVQEYLDYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELP 240 LYPSSVQEYLDYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELP Sbjct: 181 LYPSSVQEYLDYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELP 240 Query: 241 PDGLNIRQPDTVLGQEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDT 300 PDGLNIRQPDTVLGQEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDT Sbjct: 241 PDGLNIRQPDTVLGQEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDT 300 Query: 301 RQALEDLGIDEQAARDIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLK 360 RQALEDLGIDEQAARDIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLK Sbjct: 301 RQALEDLGIDEQAARDIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLK 360 Query: 361 EELYNWRDDVRPRVVGKFDDTGEWSGSQREGHGNWLLPATYELNPAQIARAIATRISRYF 420 EELYNWRDDVRPRVVGKFDDTGEWSGSQREGHGNWLLPATYELNPAQIARAIATRISRYF Sbjct: 361 EELYNWRDDVRPRVVGKFDDTGEWSGSQREGHGNWLLPATYELNPAQIARAIATRISRYF 420 Query: 421 AGHPVEQQVRARVAYLEAKEATLNISSKPDPDKDRIPHFCSGCPHNTSTKLPEGSRGLAG 480 AGHPVEQQVRARVAYLEAKEATLNISSKPDPDKDRIPHFCSGCPHNTSTKLPEGSRGLAG Sbjct: 421 AGHPVEQQVRARVAYLEAKEATLNISSKPDPDKDRIPHFCSGCPHNTSTKLPEGSRGLAG 480 Query: 481 IGCHYMVTWMDRETKLFTHMGGEGVTWVGQAPFTDEKHVFANLGDGTYFHSGLLAVRASV 540 IGCHYMVTWMDRETKLFTHMGGEGVTWVGQAPFTDEKHVFANLGDGTYFHSGLLAVRASV Sbjct: 481 IGCHYMVTWMDRETKLFTHMGGEGVTWVGQAPFTDEKHVFANLGDGTYFHSGLLAVRASV 540 Query: 541 AAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYPVGTQ 600 AAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYPVGTQ Sbjct: 541 AAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYPVGTQ 600 Query: 601 WAEGVTIRHRSELDAVQRELREQPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEA 660 WAEGVTIRHRSELDAVQRELREQPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEA Sbjct: 601 WAEGVTIRHRSELDAVQRELREQPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEA 660 Query: 661 VCEGCGDCSAQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKP 720 VCEGCGDCS QSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKP Sbjct: 661 VCEGCGDCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKP 720 Query: 721 ARAQADVGPALPSLPEPVLPGLAQPYGILVTGVGGTGVITIGQIIAMAAHVEGRACSVLD 780 ARAQADVGPALPSLPEPVLPGLAQPYGILVTGVGGTGVITIGQIIAMAAHVEGRACSVLD Sbjct: 721 ARAQADVGPALPSLPEPVLPGLAQPYGILVTGVGGTGVITIGQIIAMAAHVEGRACSVLD 780 Query: 781 MSGLAQKGGPVMSHVRVAEDAAHIHSTRVGTGMADLVIGCDVIVTASRDALSRMGEGRTH 840 MSGLAQKGGPVMSHVRVAEDAAHIHSTRVGTGMADLVIGCDVIVTASRDALSRMGEGRTH Sbjct: 781 MSGLAQKGGPVMSHVRVAEDAAHIHSTRVGTGMADLVIGCDVIVTASRDALSRMGEGRTH 840 Query: 841 AAVNSTQMPTAAFVRNPDWQFPTASSEGEIARACGRDNLSLVDAGRIATALMGDAIATNM 900 AAVNSTQMPTAAFVRNPDWQFPTASSEGEIARACGRDNLSLVDAGRIATALMGDAIATNM Sbjct: 841 AAVNSTQMPTAAFVRNPDWQFPTASSEGEIARACGRDNLSLVDAGRIATALMGDAIATNM 900 Query: 901 FMLGYAWQKGWVPLSEAALLRAIELNALQVEFNKQAFAWGRAAAHDVAFVLAAAGRNGMS 960 FMLGYAWQKGWVPLSEAALLRAIELNALQVEFNKQAFAWGRAAAHDVAFVLAAAGRNGMS Sbjct: 901 FMLGYAWQKGWVPLSEAALLRAIELNALQVEFNKQAFAWGRAAAHDVAFVLAAAGRNGMS 960 Query: 961 AQVIEFKRTPTLDELVERRVAFLTDYQNAAYARSYRDFVEQVRARESTLGEAGRGLKLSR 1020 AQVIEFKRTPTLDELVERRVAFLTDY NAAYARSYRDFVEQVRARES LGEAGRGLKLSR Sbjct: 961 AQVIEFKRTPTLDELVERRVAFLTDYLNAAYARSYRDFVEQVRARESALGEAGRGLKLSR 1020 Query: 1021 AVASYLFKLMAYKDEYEVARLHADPAFRAKIAGMFEGDYKLRFHLAPPLLAKRDDKGHLR 1080 AVASYLFKLMAYKDEYEVARLHADPAFRAKIAGMFEGDYKLRFHLAPPLLAKRDDKGHLR Sbjct: 1021 AVASYLFKLMAYKDEYEVARLHADPAFRAKIAGMFEGDYKLRFHLAPPLLAKRDDKGHLR 1080 Query: 1081 KQAFGSWMMPVFGVLARLRFLRGTALDPFAYTEERRQERALITDYRATLSRLLDRLTPEN 1140 KQAFGSWMMPVFGVLARLRFLRGTALDPFAYTEERRQERALIT+YRATLSRLLDRLTPEN Sbjct: 1081 KQAFGSWMMPVFGVLARLRFLRGTALDPFAYTEERRQERALITEYRATLSRLLDRLTPEN 1140 Query: 1141 LEQVTAVARIPEEIRGYGHVKERHLKAAMEKQAALLAQLGQATAQAQPQSPPGGGQQAA 1199 LEQ+TAVARIPEEIRGYGHVKERHLKAAMEKQAALLAQLGQA AQ QPQSPPGGGQQAA Sbjct: 1141 LEQITAVARIPEEIRGYGHVKERHLKAAMEKQAALLAQLGQAAAQTQPQSPPGGGQQAA 1199 >gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1180 Score = 1365 bits (3532), Expect = 0.0, Method: Compositional matrix adjust. Identities = 687/1182 (58%), Positives = 858/1182 (72%), Gaps = 36/1182 (3%) Query: 13 LDDVSLDDKYTLERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFITGYRGSPLGAVDQ 72 L VSLDDKYT G ++++GIQALVRLP+LQ+ D+ AGLNTAGFI+GYRGSPLG +D+ Sbjct: 14 LAPVSLDDKYTATTGAIYLSGIQALVRLPLLQQIRDRAAGLNTAGFISGYRGSPLGGLDE 73 Query: 73 TAEKARKYLEAKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFSLWYGKGPGVDRC 132 A+ +L A ++KF PG+NED+AAT+VWGTQQV L + YDGV+++WYGKGPGVDRC Sbjct: 74 ALWHAQPHLAAHRVKFQPGVNEDMAATAVWGTQQVKLIGPSDYDGVYAMWYGKGPGVDRC 133 Query: 133 GDVFKHTNMAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYLDY 192 GDV KH N AGTS HGGVL++AGDDH A SST HQS+HI A IP+LYP +VQEYLD Sbjct: 134 GDVLKHMNHAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSASMIPMLYPCNVQEYLDL 193 Query: 193 GLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELPPDGLNIRQPDTV 252 GLHGWAMSRY+G V K + D VES SV DP RVQI+LP+DF +P GLN R Sbjct: 194 GLHGWAMSRYSGCVVGFKALADTVESSASVDADPFRVQIRLPSDFVMPEGGLNARLSTDT 253 Query: 253 LG-----QEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDTRQALEDL 307 LG QEA M +YK YAALAYARAN+LNR++ DSP+AR+GII +GKSYLD +AL +L Sbjct: 254 LGVQARKQEALMQDYKIYAALAYARANRLNRVMIDSPKARLGIIASGKSYLDVLEALSEL 313 Query: 308 GIDEQAARDIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLKEELYNWR 367 GIDE A +IG+RL+KV M WPLE +GVREFAQGLDEILVVEEKRQ++EYQLKE+LYNWR Sbjct: 314 GIDEAFAAEIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEEKRQMVEYQLKEQLYNWR 373 Query: 368 DDVRPRVVGKFDDTGEWSGSQREGHGNWLLPATYELNPAQIARAIATRISRYFAGHPVEQ 427 DDVRPRV+GKFD+ GEW + G WLL + + + AQIAR IA RI+R+ Sbjct: 374 DDVRPRVIGKFDEKGEWVAPR----GEWLLTSKADFSVAQIARVIAARIARFH----TSD 425 Query: 428 QVRARVAYLEAKEATLNISSKPDPDKDRIPHFCSGCPHNTSTKLPEGSRGLAGIGCHYMV 487 ++AR+A+L+AK+A L+ + P R ++CSGCPHN+ST++PEGS LAGIGCH M Sbjct: 426 LIKARLAFLDAKDAVLSKAVNTPP---RPAYYCSGCPHNSSTRVPEGSFALAGIGCHVMA 482 Query: 488 TWMDRE-TKLFTHMGGEGVTWVGQAPFTDEKHVFANLGDGTYFHSGLLAVRASVAAKVNI 546 T + E KL THMGGEG W+GQAPF+ HVFANLGDGTYFHSG LA+RA+VAAKVN+ Sbjct: 483 TAIYPEFNKLTTHMGGEGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAVAAKVNM 542 Query: 547 TYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYPVGTQWAEGVT 606 TYKILYNDAVAMTGGQ DG + MI++Q+AAE V+ I +V+++P +Y + VT Sbjct: 543 TYKILYNDAVAMTGGQPVDGTVSVPMIAQQMAAEGVQRIALVSEDPGRYADRSSLPAAVT 602 Query: 607 IRHRSELDAVQRELREQPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEAVCEGCG 666 + R ++DAVQRELRE PGV+ +IYDQTCA+EKRRRRK+ YPDP +R IN AVCEGCG Sbjct: 603 VHDRKDMDAVQRELRELPGVTVIIYDQTCAAEKRRRRKKGDYPDPNQRLFINAAVCEGCG 662 Query: 667 DCSAQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKP------ 720 DC QSNC S+ PLET+ GRKR I+QSSCNKDYSCV GFCPSFVTV GG+L+K Sbjct: 663 DCGVQSNCTSILPLETDLGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGGKLRKSRTGVSR 722 Query: 721 ARAQADVGPALPSLPEPVLPGLAQPYGILVTGVGGTGVITIGQIIAMAAHVEGRACSVLD 780 + D G LP+PVLP P+ IL+ G+GGTGVITIG ++ MAAH+EG+ SVLD Sbjct: 723 QEERDDFG----LLPQPVLPACDTPFNILINGIGGTGVITIGALMGMAAHLEGKGASVLD 778 Query: 781 MSGLAQKGGPVMSHVRVAEDAAHIHSTRVGTGMADLVIGCDVIVTASRDALSRMGEGRTH 840 M+G++QK G V SHVR+A I + R+ TG ADLV+GCD++ + DA+S+M GRT Sbjct: 779 MTGMSQKNGSVTSHVRIAARRDAIRAQRIATGEADLVLGCDMLTAGAFDAISKMRPGRTR 838 Query: 841 AAVNSTQMPTAAFVRNPDWQFPTASSEGEIARACGRDNLSLVDAGRIATALMGDAIATNM 900 A VN Q P F RNPDW+FP + I + G+ +DA R+ATALMGD+IATN+ Sbjct: 839 AVVNLHQQPPGQFARNPDWEFPVEEVKALIVESVGQ-QADFIDATRLATALMGDSIATNL 897 Query: 901 FMLGYAWQKGWVPLSEAALLRAIELNALQVEFNKQAFAWGRAAAHDVAFVLAAAGRNGMS 960 FMLGYAWQ+G +PL+EA+LLRAIELN + V+ NK AFAWGR AA D+A V A + Sbjct: 898 FMLGYAWQRGELPLTEASLLRAIELNGVAVQANKTAFAWGRRAAVDLARVEQIA----VP 953 Query: 961 AQVIEFKRTPTLDELVERRVAFLTDYQNAAYARSYRDFVEQVRARESTLGEAGRGLKLSR 1020 AQ + +LD+L++RRV+ LTDYQ+AAYA + + VE VRA E+ LG KL+ Sbjct: 954 AQPVLLHLPQSLDQLIKRRVSLLTDYQDAAYAAQFLEVVEAVRAAEAALGSD----KLAT 1009 Query: 1021 AVASYLFKLMAYKDEYEVARLHADPAFRAKIAGMFEGDYKLRFHLAPPLLAKRDDKGHLR 1080 AVA L +LMAYKDEYEVARL+ + F+ ++A FEGD+ L FHLAPPLLA++D +GHL Sbjct: 1010 AVARNLSRLMAYKDEYEVARLYTNGQFQKELAQQFEGDFSLSFHLAPPLLARKDGQGHLL 1069 Query: 1081 KQAFGSWMMPVFGVLARLRFLRGTALDPFAYTEERRQERALITDYRATLSRLLDRLTPEN 1140 K +G W+M F +LAR++ LRG LD F +TEERR ER LI YR + LL RLT N Sbjct: 1070 KARYGGWVMQAFKLLARMKGLRGGLLDLFGHTEERRMERELIVQYRQLVLDLLPRLTAAN 1129 Query: 1141 LEQVTAVARIPEEIRGYGHVKERHLKAAMEKQAALLAQLGQA 1182 L +A++PE++RGYGHVK + + A +Q LLA QA Sbjct: 1130 LATAIELAQLPEQVRGYGHVKLKAVHAMRTRQQQLLAVFAQA 1171 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,759,359 Number of extensions: 162094 Number of successful extensions: 460 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 449 Number of HSP's successfully gapped: 2 Length of query: 1199 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1103 Effective length of database: 1,165,310 Effective search space: 1285336930 Effective search space used: 1285336930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)