BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0290.p (239 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313558|ref|YP_003777650.1| two component response regulato... 427 e-121 gi|300310163|ref|YP_003774255.1| response regulator protein [Her... 73 2e-14 gi|300310718|ref|YP_003774810.1| phosphate regulon two-component... 70 1e-13 gi|300311469|ref|YP_003775561.1| oxidative stress resistance two... 70 2e-13 gi|300312680|ref|YP_003776772.1| two component response regulato... 64 9e-12 >gi|300313558|ref|YP_003777650.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 427 bits (1099), Expect = e-121, Method: Compositional matrix adjust. Identities = 228/233 (97%), Positives = 229/233 (98%) Query: 7 MKIGLLSSDADTVSLVSQLGYPHDCTHCASLEELTSLSADGAQLLVLDLDDLLPQADELV 66 MKIGLLSSDADTVSLVSQLGYPHDCTHC SLEELTSLSADGAQLLVLDLDDLLPQADELV Sbjct: 1 MKIGLLSSDADTVSLVSQLGYPHDCTHCTSLEELTSLSADGAQLLVLDLDDLLPQADELV 60 Query: 67 ELVRRLRPPLATRPAPVVLLLATPAHQDWLWALRQAGAQELLVKPLRRQELALRMDLLMR 126 ELVRRLRPPLAT PAP VLLLATPAHQDWLWALRQAGAQELLVKPLRRQELALRMDLLMR Sbjct: 61 ELVRRLRPPLATGPAPAVLLLATPAHQDWLWALRQAGAQELLVKPLRRQELALRMDLLMR 120 Query: 127 TAEPEEAQTRVIAAGGFLLNLARLRVTHPQRPELEASLTRKEAELALLFLQNLGRPLSRA 186 TAEP EAQTRVIAAGGFLL+LARLRVTHPQRPELEASLTRKEAELALLFLQNLGRPLSRA Sbjct: 121 TAEPAEAQTRVIAAGGFLLDLARLRVTHPQRPELEASLTRKEAELALLFLQNLGRPLSRA 180 Query: 187 FLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERLD 239 FLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERLD Sbjct: 181 FLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERLD 233 >gi|300310163|ref|YP_003774255.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 5/160 (3%) Query: 80 PAPVVLLLATPAHQDWLWALRQAGAQELLVKPLRRQELALRMDLLMRTAEPEEAQTRVIA 139 P P L+L++ + D + + GA + L +P EL R++ +MR P+ + RVI Sbjct: 72 PIPT-LILSSASGGDVVARVLDNGADDFLQRPFDAVELVARINAVMRRCAPKNNR-RVIE 129 Query: 140 AGGFLLNLARLRVTHPQRPELEASLTRKEAELALLFLQNLGRPLSRAFLQEKVWGAEPEL 199 GF L + ++ + SLT +E +A LF + G +SR L +W + E+ Sbjct: 130 YAGFQLQRDTAKFSYQG---MGISLTPREFSMAWLFFSSPGVYISRETLGSVIWSTDSEI 186 Query: 200 PTRTIDTHVSRVRTKLGLQPGHGYRLATVYGYGYQLERLD 239 RTI+ HV ++R KL + + + T Y GY+L+ +D Sbjct: 187 AGRTIEQHVYKLRKKLQIDNRNVVVIRTAYSQGYRLDPVD 226 >gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 70.1 bits (170), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 9/184 (4%) Query: 52 VLDLDDLLPQADELVELVRRLRPPLATRPAPVVLLLATPAHQDWLWALRQAGAQELLVKP 111 V+ LD +LP + LV L+ LR T PV++L A +D + L + GA + + KP Sbjct: 52 VVLLDWMLPDSSGLV-LLNELRRDQRTASLPVIMLTAKGMEEDKVKGLNE-GADDYVTKP 109 Query: 112 LRRQELALRMDLLMRTAEPEEAQTRVIAAGGFLLNLARLRVTHPQRPELEASLTRKEAEL 171 +EL R+ L+R PE ++ + +++ R +V+ +P L L + E +L Sbjct: 110 FSPKELVARVQALLRRKAPE-IGSQALKYRDISIDVERRQVSVADKPVL---LDQAEFKL 165 Query: 172 ALLFLQNLGRPLSRAFLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGYRLATVYGY 231 + + R SRA L +KVWG + RT+D H+ R+R LG + + TV G Sbjct: 166 LRYLVAHPERIFSRAQLLDKVWGDHTFIEERTVDVHIMRLRKSLG---DLAHYVQTVRGM 222 Query: 232 GYQL 235 GY+L Sbjct: 223 GYKL 226 >gi|300311469|ref|YP_003775561.1| oxidative stress resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 253 Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 15/190 (7%) Query: 50 LLVLDLDDLLPQADELVELVRRLRPPLATRPAPVVLLLATPAHQDWLWALRQAGAQELLV 109 LLVLDL +LP D L + RRLR A P+++L A D + L + GA + L Sbjct: 64 LLVLDL--MLPGEDGLA-ICRRLRG--AGDQTPIIMLTAKGEDVDRIIGL-EMGADDYLP 117 Query: 110 KPLRRQELALRMDLLMRTAEPEE-----AQT-RVIAAGGFLLNLARLRVTHPQRPELEAS 163 KP +EL R++ ++R P+E ++T G F+L+L + ++ S Sbjct: 118 KPFNPRELVARINAVLRRKGPDELPGAPSETPETFEFGDFILDLGTRTL---KKNGDTIS 174 Query: 164 LTRKEAELALLFLQNLGRPLSRAFLQEKVWGAEPELPTRTIDTHVSRVRTKLGLQPGHGY 223 LT E + +F +N +PLSR L E G E E+ R++D +SR+R + P + Sbjct: 175 LTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPL 234 Query: 224 RLATVYGYGY 233 + TV+G GY Sbjct: 235 YIQTVWGLGY 244 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 64.3 bits (155), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 19/193 (9%) Query: 47 GAQLLVLDLDDLLPQADELVELVRRLRPPLATRPAPVVLLLATPAHQDWLWALRQAGAQE 106 A +LVLD+ LP D E++RR+R A PV+LL A D + L + GA + Sbjct: 42 NAAVLVLDIG--LPGIDGF-EVLRRMRA--AGNNTPVLLLTARDTIPDRVHGL-ELGADD 95 Query: 107 LLVKPLRRQELALRMDLLMRTAEPEEAQTRVIAAGGFLLNLARLRVTHPQRPELEASLTR 166 LVKP EL R+ L+R + P+ AQ V GG L+ A R R ++E SL Sbjct: 96 YLVKPFATPELVARIKALIRRSAPQPAQLTV---GGLSLDNATKRADIDGR-KIELSL-- 149 Query: 167 KEAELALLFLQNLGRPLSRAFLQEKV--WGAEPELPTRTIDTHVSRVRTKLGLQPGHGYR 224 +E + +Q+ R +S+ + + V WG + ++ +VSR+R K+ G Sbjct: 150 REWTVLEYLMQHASRVVSKQQIIDAVLPWG--EDFTINAVEVYVSRIRLKIA---DSGVA 204 Query: 225 LATVYGYGYQLER 237 + T+ G+GY LE+ Sbjct: 205 IRTIRGFGYMLEK 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 661,560 Number of extensions: 22918 Number of successful extensions: 123 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 16 Length of query: 239 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 157 Effective length of database: 1,231,600 Effective search space: 193361200 Effective search space used: 193361200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)