BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0274.p
         (366 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313544|ref|YP_003777636.1| transmembrane protein [Herbaspi...   379   e-106

>gi|300313544|ref|YP_003777636.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  379 bits (973), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/198 (98%), Positives = 196/198 (98%), Gaps = 2/198 (1%)

Query: 60  QAPDPIHGKRGKQRSVHNTYFTLPVLFAMLSNHYSMTYNAPHNWVVLLVIMAAGALIRQF 119
           QAPDPIHGKRGKQRSVHNTYFTLPVLFAMLSNHYSMTYNAPHNWVVLLVIMAAGALIRQF
Sbjct: 214 QAPDPIHGKRGKQRSVHNTYFTLPVLFAMLSNHYSMTYNAPHNWVVLLVIMAAGALIRQF 273

Query: 120 FVLRHKGVYNWWYPGIAVGLLLAVIVWMSPLMQARPVVVAA--SSSSSSSSSEGGAFAQV 177
           FVLRHKGVYNWWYPGIAVGLLLAVIVWMSPLMQARPVVVAA  SSSSSSSSSEGGAFAQV
Sbjct: 274 FVLRHKGVYNWWYPGIAVGLLLAVIVWMSPLMQARPVVVAASSSSSSSSSSSEGGAFAQV 333

Query: 178 QQVIQARCIQCHAAQPTLMPVPGKGVLLDSPEHISQHAQQIYQQAVVQKAMPLGNMTHIS 237
           QQVIQARCIQCHAAQPTLMPVPGKGVLLDSPEHISQHAQQIYQQAVVQKAMPLGNMTHI+
Sbjct: 334 QQVIQARCIQCHAAQPTLMPVPGKGVLLDSPEHISQHAQQIYQQAVVQKAMPLGNMTHIT 393

Query: 238 EEERAVIGKWFEAGAAVK 255
           EEERAVIGKWFEAGAAVK
Sbjct: 394 EEERAVIGKWFEAGAAVK 411



 Score =  211 bits (538), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 257 QAPDPIHGKRGKQRSVHNTYFTLPVLFAMLSNHYSMTYNAPHNWVVLLVIMAAGALIRQF 316
           QAPDPIHGKRGKQRSVHNTYFTLPVLFAMLSNHYSMTYNAPHNWVVLLVIMAAGALIRQF
Sbjct: 214 QAPDPIHGKRGKQRSVHNTYFTLPVLFAMLSNHYSMTYNAPHNWVVLLVIMAAGALIRQF 273

Query: 317 FVLRHKGVYNWWYPGIAVGLLLAVIVWMSPLMQARPVVVAA 357
           FVLRHKGVYNWWYPGIAVGLLLAVIVWMSPLMQARPVVVAA
Sbjct: 274 FVLRHKGVYNWWYPGIAVGLLLAVIVWMSPLMQARPVVVAA 314



 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/58 (98%), Positives = 58/58 (100%)

Query: 1   VPGKGVLLDSPEHISQHAQQIYQQAVVQKAMPLGNMTHISEEERAVIGKWFEAGAAVK 58
           VPGKGVLLDSPEHISQHAQQIYQQAVVQKAMPLGNMTHI+EEERAVIGKWFEAGAAVK
Sbjct: 354 VPGKGVLLDSPEHISQHAQQIYQQAVVQKAMPLGNMTHITEEERAVIGKWFEAGAAVK 411


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.132    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,195,732
Number of extensions: 48159
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 3
Length of query: 366
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 280
Effective length of database: 1,212,660
Effective search space: 339544800
Effective search space used: 339544800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)