BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0261.p (274 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313536|ref|YP_003777628.1| amino acid ABC transporter perm... 443 e-126 gi|300310827|ref|YP_003774919.1| amino acid ABC transporter perm... 202 2e-53 gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 199 3e-52 gi|300313166|ref|YP_003777258.1| amino acid ABC transporter perm... 196 2e-51 gi|300309585|ref|YP_003773677.1| amino acid ABC transporter perm... 182 2e-47 >gi|300313536|ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 223 Score = 443 bits (1140), Expect = e-126, Method: Compositional matrix adjust. Identities = 223/223 (100%), Positives = 223/223 (100%) Query: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY Sbjct: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ Sbjct: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 Query: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI Sbjct: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARRTA 223 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARRTA Sbjct: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARRTA 223 >gi|300310827|ref|YP_003774919.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 202 bits (515), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 108/221 (48%), Positives = 148/221 (66%) Query: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 M Y F F F + D ++ G TI L A+ + G+AVGIFGA G + V+ Y Sbjct: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE+IR+TPFLVQLF IFFGLPS+ + + AA+VAM +NLGAYSTEI+RAG+ AI Q Sbjct: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 Query: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 IEAAQ+L+M+R Q+ RH++L PAL+K++PAL+SQ ++ML S++ S I+ EEL+ AN + Sbjct: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARR 221 FR+FE Y+V +Y++LA+L R LIG RR Sbjct: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRR 221 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 199 bits (505), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 105/245 (42%), Positives = 158/245 (64%) Query: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 M + DF Y V + G T+++ + ++GVA+GIF A+A+ WL S Y Sbjct: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 +E++RNTPFLVQ+F ++FGL SL I + AA++AM+IN+ AY+ EIIRAG+ ++PRGQ Sbjct: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 Query: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 IEAAQ L +S +I H++L+PA+++++PAL+SQ +++M SA+ SQI+ EEL+ AN + Sbjct: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARRTA*SLSPPGTSSATSCWPG 240 Q FR+ E Y+V A+YLVLAIL++ V IG RRT + G + S P Sbjct: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTLRRAAAQGRRTPVSRLPA 240 Query: 241 AGPSS 245 P++ Sbjct: 241 TDPAA 245 >gi|300313166|ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 196 bits (497), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 98/206 (47%), Positives = 141/206 (68%) Query: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 M Y FDF+S F D ++ G TI+L A+ VLG AVG A A ++ +V Y Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 VEIIRNTP LVQ+F +FFGL S+ +S TAA++A+ +N+GAY+TEI+RAG+ +I GQ Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 IEAA+ L MSR ++ H++L PA+++++P+L+SQ +++ML S++ SQI+ EEL+ AN + Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLR 206 Q FR+FE Y V YLVL+ L R Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFR 206 >gi|300309585|ref|YP_003773677.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 182 bits (463), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 146/221 (66%) Query: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 M Y+FDF S + ++++G TT++L + +LG +G A AR GWL+ VSGY Sbjct: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE+IRNTP L+Q +F+ FGL S+ + + + A +A+VIN+GAYS EI+RAG+++I GQ Sbjct: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 Query: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 +EAA L +S Q+F H++L PA++++WPAL+SQ V++ML S++ S + EEL AN + Sbjct: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 Query: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARR 221 Q FR FE +++ A YL LA L+R L+G T RR Sbjct: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRR 221 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.138 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 624,535 Number of extensions: 20675 Number of successful extensions: 121 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 110 Number of HSP's successfully gapped: 19 Length of query: 274 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 190 Effective length of database: 1,222,130 Effective search space: 232204700 Effective search space used: 232204700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)