BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0259.p (249 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313534|ref|YP_003777626.1| GntR family transcription regul... 497 e-142 gi|300313824|ref|YP_003777916.1| GntR family transcription regul... 130 8e-32 gi|300313540|ref|YP_003777632.1| transcription regulator protein... 117 8e-28 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 72 6e-14 >gi|300313534|ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 497 bits (1280), Expect = e-142, Method: Compositional matrix adjust. Identities = 249/249 (100%), Positives = 249/249 (100%) Query: 1 MSTNPSLKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGI 60 MSTNPSLKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGI Sbjct: 1 MSTNPSLKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGI 60 Query: 61 VTVSARRGWFVIEPTPAQAREAFEARRVIELGLLRQARLRPVGDTAIGQLREHIAREEAA 120 VTVSARRGWFVIEPTPAQAREAFEARRVIELGLLRQARLRPVGDTAIGQLREHIAREEAA Sbjct: 61 VTVSARRGWFVIEPTPAQAREAFEARRVIELGLLRQARLRPVGDTAIGQLREHIAREEAA 120 Query: 121 IAGADVGARSYLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCSEH 180 IAGADVGARSYLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCSEH Sbjct: 121 IAGADVGARSYLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCSEH 180 Query: 181 VLIVEALERGDLEQAEQLMHDHLQHVESGLNQVRSSDPLEPLRQALASVSRQGAASDAKT 240 VLIVEALERGDLEQAEQLMHDHLQHVESGLNQVRSSDPLEPLRQALASVSRQGAASDAKT Sbjct: 181 VLIVEALERGDLEQAEQLMHDHLQHVESGLNQVRSSDPLEPLRQALASVSRQGAASDAKT 240 Query: 241 VRPPGKGPL 249 VRPPGKGPL Sbjct: 241 VRPPGKGPL 249 >gi|300313824|ref|YP_003777916.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 130 bits (328), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 113/206 (54%), Gaps = 1/206 (0%) Query: 5 PSLKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGIVTVS 64 P+ SS IA I I A++L PG +L E+ LA +++VSRT++R AL L +V + Sbjct: 6 PAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLI 65 Query: 65 ARRGWFVIEPTPAQAREAFEARRVIELGLLRQARLRPVGDTAIGQLREHIAREEAAIAGA 124 +G FV +PT + R F RR +E ++R+ R + +L H+ E A++ Sbjct: 66 PDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPED-YARLEAHLELERQAVSDD 124 Query: 125 DVGARSYLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCSEHVLIV 184 ++ RS LL DFH+ LA +GN +L + L L R+ L ML+QS+ A S EH + Sbjct: 125 NMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFI 184 Query: 185 EALERGDLEQAEQLMHDHLQHVESGL 210 A GD E+A +LM HL HVE L Sbjct: 185 AAARAGDTERAMELMEHHLLHVEQAL 210 >gi|300313540|ref|YP_003777632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 117 bits (294), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 108/198 (54%), Gaps = 13/198 (6%) Query: 17 ITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGIVTVSARRGWFVIEPTP 76 I +AI+ +L P T+L EQ L ++ +R VR+ L L A G+V + A RG F+ P+P Sbjct: 35 IYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLARLAAEGMVDLEANRGAFIASPSP 94 Query: 77 AQAREAFEARRVIELGLLRQARLRPVGDTA----IGQLREHIAREEAAIAGADVGARSYL 132 A+ R+ FE R ++E +L + +G TA I LR + E D L Sbjct: 95 AEVRDMFELRNILEHAVLEK-----LGHTAGTRQIAGLRRMVEEERDCYLNGDRPRWIRL 149 Query: 133 LGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCS--EHVLIVEALERG 190 FH+ LAE GN+LL ETLR L +RTTL M+ ++ ++CS EH ++EALE+G Sbjct: 150 SAQFHLALAELTGNALLVETLRKLVSRTTL--MIAKTEAPGHNACSFDEHETVLEALEKG 207 Query: 191 DLEQAEQLMHDHLQHVES 208 D++ A+ M HL E Sbjct: 208 DIKAAQAHMAHHLHLCED 225 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 71.6 bits (174), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/190 (34%), Positives = 88/190 (46%), Gaps = 6/190 (3%) Query: 17 ITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGIVTVSARRGWFVIEPTP 76 I E I +L+PG L E LA+ F VSRT +REAL L + GIV + RRG V E P Sbjct: 15 IEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGAIVAEIGP 74 Query: 77 AQAREAFEARRVIE--LGLLRQARLRPVGDTAIGQLREHIAREEAAIAGADVGARSYLLG 134 Q E FE E G L R+ P + L H A + A A D A YL Sbjct: 75 QQLIEMFEVMAEFEAMCGRLAARRMTPAEHAEL--LAAHQACQAARDAN-DPDAYFYLNE 131 Query: 135 DFHVCLAECLGNSLLAETLRDLTARTTLTAMLH-QSSEQAEDSCSEHVLIVEALERGDLE 193 FH + N LA+ R L R L + ++ + S EH +V+A+ GD E Sbjct: 132 AFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQAVVDAIISGDAE 191 Query: 194 QAEQLMHDHL 203 + L+ +H+ Sbjct: 192 KTVDLLREHI 201 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.130 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 642,088 Number of extensions: 21496 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 13 Length of query: 249 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 166 Effective length of database: 1,226,865 Effective search space: 203659590 Effective search space used: 203659590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)