BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0257.p (1331 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313532|ref|YP_003777624.1| TPR repeat containing protein [... 2533 0.0 >gi|300313532|ref|YP_003777624.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 1349 Score = 2533 bits (6564), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1323/1333 (99%), Positives = 1325/1333 (99%), Gaps = 2/1333 (0%) Query: 1 VFALVYPKVSLQQRLEVANASGRGDQLTIEYLKVFLKAKPGNTALRAELVKQMIDLGQFA 60 VFALVYPKVSLQQRLEVANASGRGDQLTIEYLKVFLKAKPGNTALRAELVKQMIDLGQFA Sbjct: 17 VFALVYPKVSLQQRLEVANASGRGDQLTIEYLKVFLKAKPGNTALRAELVKQMIDLGQFA 76 Query: 61 EARQQLAFLQMGTDPAARLAAAWLEYRIRQQEAFALPATSPERTRLLAELRIQLQQLMTY 120 EARQQLAFLQMGTDPAARLAAAWLEYRIRQQEAFALPATSPERTRLLAELRIQLQQLMTY Sbjct: 77 EARQQLAFLQMGTDPAARLAAAWLEYRIRQQEAFALPATSPERTRLLAELRIQLQQLMTY 136 Query: 121 PLSAQQWLGLSQDALALGDVEAARVAFERLLAERSTRDLPYGEAVRLGQQSLGMGDYRSS 180 PLSAQQWLGLSQDALALGDVEAARVAFERLLAERSTRDLPYGEAVRLGQQSLGMGDYRSS Sbjct: 137 PLSAQQWLGLSQDALALGDVEAARVAFERLLAERSTRDLPYGEAVRLGQQSLGMGDYRSS 196 Query: 181 ASFYLLAMQHAGSLEARRDNFITALRNLQAGGLYQEALEVADANLGPLANDKATLLFLTR 240 ASFYLLAMQHAGSLEARRDNFITALRNLQAGGLYQEALEVADANLGPLANDKATLLFLTR Sbjct: 197 ASFYLLAMQHAGSLEARRDNFITALRNLQAGGLYQEALEVADANLGPLANDKATLLFLTR 256 Query: 241 LAQAANRPEAAERYVRQLLQLSMGRAAATLARAGQGSAALATVHFQQMSEFTRSLRLTQA 300 LAQAANRPEAAERYVRQLLQLSMGRAAATLARAGQGSAALATVHFQQMSEFTRSLRLT+A Sbjct: 257 LAQAANRPEAAERYVRQLLQLSMGRAAATLARAGQGSAALATVHFQQMSEFTRSLRLTRA 316 Query: 301 LLQQPQQPHQLQQRMQMAMRQARVIRVAAADPSQPPAAEVNASRELARLPFDDEIYTLAY 360 LLQQPQQPHQLQQRMQMAMRQARVIRVAAADPSQPPAAEVNASRELARLPFDDEIYTLAY Sbjct: 317 LLQQPQQPHQLQQRMQMAMRQARVIRVAAADPSQPPAAEVNASRELARLPFDDEIYTLAY 376 Query: 361 NVFLGNRNLTDARLLAQSAVRQRPDDPAWRKRLAEVSEWSGVPEQATPHWLAYARLTNDE 420 NVFLGNRNLTDARLLAQSAVRQRPDD AWRKRLAEVSEWSGVPEQATPHWLAYARLTNDE Sbjct: 377 NVFLGNRNLTDARLLAQSAVRQRPDDAAWRKRLAEVSEWSGVPEQATPHWLAYARLTNDE 436 Query: 421 GAWDNVMRIAAGTFEQDILTEALQHKMQVEPGDPKWVNLLVAQYENVGQPERAAALLEAR 480 AWDNVMRIAAGTFEQDILTEALQHKMQVEPGDPKWVNLLVAQYENVGQPERAAALLEAR Sbjct: 437 AAWDNVMRIAAGTFEQDILTEALQHKMQVEPGDPKWVNLLVAQYENVGQPERAAALLEAR 496 Query: 481 LRAN--ANANANANAATERNGEMDALAKLYLRMGRDDDANAVLVRQRQEFGPSAANALMA 538 LR N A ANANANAATERNGEMDALAKLYLRMGRDDDANAVLVRQRQEFGPSAANALMA Sbjct: 497 LRQNRTAAANANANAATERNGEMDALAKLYLRMGRDDDANAVLVRQRQEFGPSAANALMA 556 Query: 539 ANLLYLRGRGEQALELLRQAAPVAPPGNADFWRTYAELARYLGLDEEARQGYDQLLATNQ 598 ANLLYLRGRGEQALELLRQAAPVAPPGNADFWRTYAELARYLGLDEEAR+GYDQLLATNQ Sbjct: 557 ANLLYLRGRGEQALELLRQAAPVAPPGNADFWRTYAELARYLGLDEEARRGYDQLLATNQ 616 Query: 599 AAEGDMSNLMVVIQEHEPRAAAALAEFGFRRTSVANFAVQALTYRMRLNDLDGGQRFLDS 658 AAEGDMSNLMVVIQEHEPRAAA LAEFGFRRTSVANFAVQALTYRMRLNDLDGGQRFLDS Sbjct: 617 AAEGDMSNLMVVIQEHEPRAAAELAEFGFRRTSVANFAVQALTYRMRLNDLDGGQRFLDS 676 Query: 659 ITPQQNAALEKYVPYLSVRSAFRQMKHDYAGARADMRLALSLSPRSAEVRAEMIWILIAT 718 ITPQQNAALEKYVPYLSVRSAFRQMKHDYAGARADMRLALSLSPRSAEVRAEMIWILIAT Sbjct: 677 ITPQQNAALEKYVPYLSVRSAFRQMKHDYAGARADMRLALSLSPRSAEVRAEMIWILIAT 736 Query: 719 RDTELLNRALTLWAADAENAPQLWGPFAAANISLNRQNVALHWFRKSGFPQNDYLWLLSY 778 RDTELLNRALTLWAADAENAPQLWGPFAAANISLNRQNVALHWFRKSGFPQNDYLWLLSY Sbjct: 737 RDTELLNRALTLWAADAENAPQLWGPFAAANISLNRQNVALHWFRKSGFPQNDYLWLLSY 796 Query: 779 AEALDASGQPDLAWRIRRRAWIELRDPARLRNIPPAQLREWRDRLAALAPLFMPADASNK 838 AEALDASGQPDLAWRIRRRAWIELRDPARLRNIPPAQLREWRDRLAALAPLFMPADASNK Sbjct: 797 AEALDASGQPDLAWRIRRRAWIELRDPARLRNIPPAQLREWRDRLAALAPLFMPADASNK 856 Query: 839 VMRALLDSDVTRLVRSDAAPPPADGPALLKDMQAAARSDARQHAQDQDVSARLMDGPAAL 898 VMRALLDSDVTRLVRSDAAPPPADGPALLKDMQAAARSDARQHAQDQDVSARLMDGPAAL Sbjct: 857 VMRALLDSDVTRLVRSDAAPPPADGPALLKDMQAAARSDARQHAQDQDVSARLMDGPAAL 916 Query: 899 FAPTGDTGQRPRDDARLSASARELALAYAMNQGDSDLARTWLATRFATQLDKPLWGELAM 958 FAPTGDTGQRPRDDARLSASARELALAYAMNQGDSDLARTWLATRFATQLDKPLWGELAM Sbjct: 917 FAPTGDTGQRPRDDARLSASARELALAYAMNQGDSDLARTWLATRFATQLDKPLWGELAM 976 Query: 959 ALGNDDRQGLNRLLDNLADWLPMYDRIEAARVAGRVPLAQTLAFDQLQRLPGDDELHARL 1018 ALGNDDRQGLNRLLDNLADWLPMYDRIEAARVAGRVPLAQTLAFDQLQRLPGDDELHARL Sbjct: 977 ALGNDDRQGLNRLLDNLADWLPMYDRIEAARVAGRVPLAQTLAFDQLQRLPGDDELHARL 1036 Query: 1019 TGLVTDDPAKFSVGYTATREFPLATKLFTLSSGVNLTPGTRLDFGYIERRQSVDDSTLLG 1078 TGLVTDDPAKFS GYTATREFPLATKLFTLSSGVNLTPGTRLDFGYIERRQSVDDSTLLG Sbjct: 1037 TGLVTDDPAKFSAGYTATREFPLATKLFTLSSGVNLTPGTRLDFGYIERRQSVDDSTLLG 1096 Query: 1079 DVPAVDRLYSFTLRRRIEEGFVSAALQHRQAMTSFNGLRLEFSRQLTPKLTLSGNGGINL 1138 DVPAVDRLYSFTLRRRIEEGFVSAALQHRQAMTSFNGLRLEFSRQLTPKLTLSGNGGINL Sbjct: 1097 DVPAVDRLYSFTLRRRIEEGFVSAALQHRQAMTSFNGLRLEFSRQLTPKLTLSGNGGINL 1156 Query: 1139 SATDSAFMRVGAKRDGGELNLNVQLSRTEYLRLGGGLQHYASQSGTSLGRGRTLNAEVGT 1198 SATDSAFMRVGAKRDGGELNLNVQLSRTEYLRLGGGLQHYASQSGTSLGRGRTLNAEVGT Sbjct: 1157 SATDSAFMRVGAKRDGGELNLNVQLSRTEYLRLGGGLQHYASQSGTSLGRGRTLNAEVGT 1216 Query: 1199 HFRVEYPNLTLRAFVNDAKFTDYGNSDSLIARLVPVGTDPASFRYMPLDSRSWGAALGAG 1258 HFRVEYPNLTLRAFVNDAKFTDYGNSDSLIARLVPVGTDPASFRYMPLDSRSWGAALGAG Sbjct: 1217 HFRVEYPNLTLRAFVNDAKFTDYGNSDSLIARLVPVGTDPASFRYMPLDSRSWGAALGAG 1276 Query: 1259 TVVENAYTRAWRPYAEFGMTRTSDIGWGRNLRAGIAGSVVGQDVLSIGAQSTAATPNNPQ 1318 TVVENAYTRAWRPYAEFGMTRTSDIGWGRNLRAGIAGSVVGQDVLSIGAQSTAATPNNPQ Sbjct: 1277 TVVENAYTRAWRPYAEFGMTRTSDIGWGRNLRAGIAGSVVGQDVLSIGAQSTAATPNNPQ 1336 Query: 1319 RGFELNVLYRWFY 1331 RGFELNVLYRWFY Sbjct: 1337 RGFELNVLYRWFY 1349 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.132 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,969,237 Number of extensions: 165979 Number of successful extensions: 636 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 629 Number of HSP's successfully gapped: 1 Length of query: 1331 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1234 Effective length of database: 1,160,575 Effective search space: 1432149550 Effective search space used: 1432149550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)