BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0256.p
         (204 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313531|ref|YP_003777623.1| lipoprotein [Herbaspirillum ser...   399   e-112

>gi|300313531|ref|YP_003777623.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 201

 Score =  399 bits (1025), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/201 (99%), Positives = 200/201 (99%)

Query: 4   MKKLTFSRLLRLGAAALLALGLAACSTTDIGNAPTLPANARWGLLPFANHTETPQAGLRA 63
           MKKLTFS LLRLGAAALLALGLAACSTTDIGNAPTLPANARWGLLPFANHTETPQAGLRA
Sbjct: 1   MKKLTFSCLLRLGAAALLALGLAACSTTDIGNAPTLPANARWGLLPFANHTETPQAGLRA 60

Query: 64  EAIAETILRTNGMTELQHYPASLNNETLFEPMDRKQLDAALQWARSENIAYALSGSVDEW 123
           EAIAETILRTNGMTELQHYPASLNNETLFEPMDRKQLDAALQWARSENIAYALSGSVDEW
Sbjct: 61  EAIAETILRTNGMTELQHYPASLNNETLFEPMDRKQLDAALQWARSENIAYALSGSVDEW 120

Query: 124 RYKVGIDGEPAVGMTLQLIEVATGKVVWAAAGAKSGWSREALSAVAQKLARTLLAPLSAT 183
           RYKVGIDGEPAVGMTLQLIEVATGKVVWAAAGAKSGWSREALSAVAQKLARTLLAPLSAT
Sbjct: 121 RYKVGIDGEPAVGMTLQLIEVATGKVVWAAAGAKSGWSREALSAVAQKLARTLLAPLSAT 180

Query: 184 ISDTTPAVPATGAPATFNGGA 204
           ISDTTPAVPATGAPATFNGGA
Sbjct: 181 ISDTTPAVPATGAPATFNGGA 201


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 561,217
Number of extensions: 22460
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,236,335
Effective search space: 152069205
Effective search space used: 152069205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)