BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0255.p
         (471 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313530|ref|YP_003777622.1| transmembrane protein [Herbaspi...   954   0.0  

>gi|300313530|ref|YP_003777622.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 491

 Score =  954 bits (2466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/471 (100%), Positives = 471/471 (100%)

Query: 1   MSTALTAGQKRQKFWSRFFTRFDTDSGSPRKAVLRIIETVALVLAALLFAHWVAPEDPMG 60
           MSTALTAGQKRQKFWSRFFTRFDTDSGSPRKAVLRIIETVALVLAALLFAHWVAPEDPMG
Sbjct: 21  MSTALTAGQKRQKFWSRFFTRFDTDSGSPRKAVLRIIETVALVLAALLFAHWVAPEDPMG 80

Query: 61  IRAQFPWLWLVPAILAMRYGSTLGVVAVATMMAGWYLLVHGHQASEADAVAAAAQAFPQS 120
           IRAQFPWLWLVPAILAMRYGSTLGVVAVATMMAGWYLLVHGHQASEADAVAAAAQAFPQS
Sbjct: 81  IRAQFPWLWLVPAILAMRYGSTLGVVAVATMMAGWYLLVHGHQASEADAVAAAAQAFPQS 140

Query: 121 YFLGGLVLTLLCGQFAEVWNARSRRLRAINAYLDERLTMLTKNHFLLRLSHERLEQDLLS 180
           YFLGGLVLTLLCGQFAEVWNARSRRLRAINAYLDERLTMLTKNHFLLRLSHERLEQDLLS
Sbjct: 141 YFLGGLVLTLLCGQFAEVWNARSRRLRAINAYLDERLTMLTKNHFLLRLSHERLEQDLLS 200

Query: 181 KPLTLRESLDRMRALTLTQILLDPSRMPAPDAFLQILAQSCQVASAAVYVCDAAGHITPE 240
           KPLTLRESLDRMRALTLTQILLDPSRMPAPDAFLQILAQSCQVASAAVYVCDAAGHITPE
Sbjct: 201 KPLTLRESLDRMRALTLTQILLDPSRMPAPDAFLQILAQSCQVASAAVYVCDAAGHITPE 260

Query: 241 PAASVGKVSELAADDALVRYCLAQRKLGHIQTESLNQNLRNQSRYLVCAPLLNFDGRLFG 300
           PAASVGKVSELAADDALVRYCLAQRKLGHIQTESLNQNLRNQSRYLVCAPLLNFDGRLFG
Sbjct: 261 PAASVGKVSELAADDALVRYCLAQRKLGHIQTESLNQNLRNQSRYLVCAPLLNFDGRLFG 320

Query: 301 LLVVEQLPFVALNEDTLQLMSVLIDYYADGIEVGGTARSILQQLPTCPPELAVDVVRLHR 360
           LLVVEQLPFVALNEDTLQLMSVLIDYYADGIEVGGTARSILQQLPTCPPELAVDVVRLHR
Sbjct: 321 LLVVEQLPFVALNEDTLQLMSVLIDYYADGIEVGGTARSILQQLPTCPPELAVDVVRLHR 380

Query: 361 LKRSTDIDSSLVALVFGDDEISRDMFDQIRRLKRAADVVWTYKAGGRNVLMTLLPLAGAA 420
           LKRSTDIDSSLVALVFGDDEISRDMFDQIRRLKRAADVVWTYKAGGRNVLMTLLPLAGAA
Sbjct: 381 LKRSTDIDSSLVALVFGDDEISRDMFDQIRRLKRAADVVWTYKAGGRNVLMTLLPLAGAA 440

Query: 421 AVDGYLMRVEAASQAQFGAKSLANYAAIHTAAIGGDEPSRLLPNLVERCAA 471
           AVDGYLMRVEAASQAQFGAKSLANYAAIHTAAIGGDEPSRLLPNLVERCAA
Sbjct: 441 AVDGYLMRVEAASQAQFGAKSLANYAAIHTAAIGGDEPSRLLPNLVERCAA 491


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,384,245
Number of extensions: 53334
Number of successful extensions: 264
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 382
Effective length of database: 1,198,455
Effective search space: 457809810
Effective search space used: 457809810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)