BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0254.p
         (343 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313529|ref|YP_003777621.1| transmembrane protein [Herbaspi...   687   0.0  

>gi|300313529|ref|YP_003777621.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 346

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/346 (98%), Positives = 341/346 (98%), Gaps = 3/346 (0%)

Query: 1   VLLKFSLAGLSFEVASIALLLNGGNGLAVLGGYLLLHMASSALFALAIALVAPQRYAR-- 58
           +LLKFSLAGLSFEVASIALLLNGGNGLAVLGGYLLLHMASSALFALAIALVAPQRY R  
Sbjct: 1   MLLKFSLAGLSFEVASIALLLNGGNGLAVLGGYLLLHMASSALFALAIALVAPQRYQRPR 60

Query: 59  -GLAGYLFCFNFFIPVGGALCMLSALLVAMFWPKDQTEDYFDTAQAPAFVTVRRREGSGF 117
            GL GYLFCFNFFIPVGGALCMLSALLVAMFWPKDQTEDYFDTAQAPAFVTVRRREGSGF
Sbjct: 61  AGLLGYLFCFNFFIPVGGALCMLSALLVAMFWPKDQTEDYFDTAQAPAFVTVRRREGSGF 120

Query: 118 SGNRVRAQLGNVATPLDKRLNALVAIQSTPTRASGASLRNLLADPADDVRLLAYGILDSK 177
           SGNRVRAQLGNVATPLDKRLNALVAIQSTPTRASGASLRNLLADPADDVRLLAYGILDSK
Sbjct: 121 SGNRVRAQLGNVATPLDKRLNALVAIQSTPTRASGASLRNLLADPADDVRLLAYGILDSK 180

Query: 178 EKKITQRIVDIRHHLKTVSDPETLAVLHQQVAELYQELIYQNLVQGDLLQYACTQMREHA 237
           EKKITQRIVDIRHHLKTVSDPETLAVLHQQVAELYQELIYQNLVQGDLLQYACTQMREHA
Sbjct: 181 EKKITQRIVDIRHHLKTVSDPETLAVLHQQVAELYQELIYQNLVQGDLLQYACTQMREHA 240

Query: 238 RAALAIDEGQPGLWFMLVRLELMSGNAPGAAEALRQAHEHGFSRVRLLPYLAELSFLEHD 297
           RAALAIDEGQPGLWFMLVRLELMSGNAPGAAEALRQAHEHGFSRVRLLPYLAELSFLEHD
Sbjct: 241 RAALAIDEGQPGLWFMLVRLELMSGNAPGAAEALRQAHEHGFSRVRLLPYLAELSFLEHD 300

Query: 298 YDQVRKLFIEMQYDPSVSSQPQLHRYWRHGRRTIANRSDSLPRARS 343
           YDQVRKLFIEMQYDPSVSSQPQLHRYWRHGRRTIANRSDSLPRARS
Sbjct: 301 YDQVRKLFIEMQYDPSVSSQPQLHRYWRHGRRTIANRSDSLPRARS 346


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 962,522
Number of extensions: 36887
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,212,660
Effective search space: 311653620
Effective search space used: 311653620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 131 (55.1 bits)