BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0251.p
         (520 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313526|ref|YP_003777618.1| hypothetical protein Hsero_4241...  1038   0.0  

>gi|300313526|ref|YP_003777618.1| hypothetical protein Hsero_4241
           [Herbaspirillum seropedicae SmR1]
          Length = 520

 Score = 1038 bits (2684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/520 (99%), Positives = 515/520 (99%)

Query: 1   METELKLLIAPAHTQAFIRHPLIKRYALAAPRIKDQTGTYFDTPDLLLRGNDAGLRVRRT 60
           METELKLLIAPAHTQAFIRHPLIKRYALAAPRIKDQ GTYFDTPDLLLRGNDAGLRVRRT
Sbjct: 1   METELKLLIAPAHTQAFIRHPLIKRYALAAPRIKDQIGTYFDTPDLLLRGNDAGLRVRRT 60

Query: 61  GKEYIQTLKAGGGVSGGLHQRHEWESLVEGEQPDLAVLRELVDSDAPWARKVFSRQTAAR 120
           GKEYIQTLKAGGGVSGGLHQRHEWESLVEGEQPDLAVLRELVDSDAPWARKVFSRQTAAR
Sbjct: 61  GKEYIQTLKAGGGVSGGLHQRHEWESLVEGEQPDLAVLRELVDSDAPWARKVFSRQTAAR 120

Query: 121 LTPIFSTRIQRMVWDLKLDDGAEVECVLDRGTVEHGALQTEVCEIELELKSGEAASLLGF 180
           LTPIFSTRIQRMVWDLKLDDGAEVECVLDRGTVEHGALQTEVCEIELELKSGEA SLLGF
Sbjct: 121 LTPIFSTRIQRMVWDLKLDDGAEVECVLDRGTVEHGALQTEVCEIELELKSGEATSLLGF 180

Query: 181 ALRLLQDLPLRIGIQSKAQRGYTLFHQARQGDAAASSSATRAQPLQLTRKMPLEQAFLAV 240
           ALRLLQDLPLRIGIQSKAQRGYTLFHQARQGDAAASSSATRAQPLQLTRKMPLEQAFLAV
Sbjct: 181 ALRLLQDLPLRIGIQSKAQRGYTLFHQARQGDAAASSSATRAQPLQLTRKMPLEQAFLAV 240

Query: 241 IGNCVAQIQANDIADQDSGDIERLHQMRVGLRRLRSAFALFGQVIPLPAALESEFEWIAE 300
           IGNCVAQIQANDIADQDSGDIERLHQMRVGLRRLRSAF LFGQVI LPAALESEFEWIAE
Sbjct: 241 IGNCVAQIQANDIADQDSGDIERLHQMRVGLRRLRSAFTLFGQVITLPAALESEFEWIAE 300

Query: 301 AIGAARDWDVLATETLPLLEMPTAAGVDLDAVRKAALIQAGKEHALAVHAVASPRYTVLV 360
           AIG ARDWDVLATETLPLLEMPTAAGVDLDAVRKAALIQAGKEHALAVHAVASPRYTVLV
Sbjct: 301 AIGTARDWDVLATETLPLLEMPTAAGVDLDAVRKAALIQAGKEHALAVHAVASPRYTVLV 360

Query: 361 LQFNRWLLQRGWRENQGQEQDQAAPSALAQPLARFARQMLQRDQKRLSKRGAHLEESDRA 420
           LQFNRWLLQRGWRENQGQEQDQAAPSALAQPLARFARQMLQRDQKRLSKRGAHLEESDRA
Sbjct: 361 LQFNRWLLQRGWRENQGQEQDQAAPSALAQPLARFARQMLQRDQKRLSKRGAHLEESDRA 420

Query: 421 RHRTRIAAKKMRYDVEFFQALYGEKNSRAYLKALARLQDHLGQQNDLVVADALLQQLQQG 480
           RHRTRIAAKKMRYDVEFFQALYGEKNSRAYLKALARLQDHLGQQNDLVVADALLQQLQQG
Sbjct: 421 RHRTRIAAKKMRYDVEFFQALYGEKNSRAYLKALARLQDHLGQQNDLVVADALLQQLQQG 480

Query: 481 QTRQAPSIAWVRGFLAGQTRDGHAHTRRLWKKWQSQELPR 520
           QTRQAPSIAWVRGFLAGQTRDGHAHTRRLWKKWQSQELPR
Sbjct: 481 QTRQAPSIAWVRGFLAGQTRDGHAHTRRLWKKWQSQELPR 520


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,601,520
Number of extensions: 66519
Number of successful extensions: 236
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 431
Effective length of database: 1,198,455
Effective search space: 516534105
Effective search space used: 516534105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)