BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0250.p (298 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313525|ref|YP_003777617.1| AraC family transcription regul... 597 e-172 gi|300311011|ref|YP_003775103.1| AraC family transcription regul... 150 9e-38 gi|300310273|ref|YP_003774365.1| AraC family transcription regul... 146 2e-36 gi|300310311|ref|YP_003774403.1| AraC family transcription regul... 144 8e-36 >gi|300313525|ref|YP_003777617.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 298 Score = 597 bits (1539), Expect = e-172, Method: Compositional matrix adjust. Identities = 295/298 (98%), Positives = 295/298 (98%) Query: 1 MATLYASLVEHDPDRLDAAVTALRVHTSQDERETPLHSHRKGQLVVALRGAVTCETAQGM 60 MATLYASLVEHDPDRLDAAVTALRVHTSQDERETPLHSHRKGQLVVALRGAVTCETAQGM Sbjct: 1 MATLYASLVEHDPDRLDAAVTALRVHTSQDERETPLHSHRKGQLVVALRGAVTCETAQGM 60 Query: 61 WIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAPQAASMPEQCCTLALSPLLVQMICHLA 120 WIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAPQAASMPEQCCTLALSPLLVQMICHLA Sbjct: 61 WIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAPQAASMPEQCCTLALSPLLVQMICHLA 120 Query: 121 EQRQDYAPHERTARLAAVLVEELEHSQRHALPLHLPAPQHSRLRAIARHLAEHPADRSTV 180 EQRQDYAPHERTARLAAVLVEELEHSQRHALPLHLPAPQHSRLRAIARHLAEHPADR TV Sbjct: 121 EQRQDYAPHERTARLAAVLVEELEHSQRHALPLHLPAPQHSRLRAIARHLAEHPADRRTV 180 Query: 181 AQWGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDSV 240 AQWGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDSV Sbjct: 181 AQWGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDSV 240 Query: 241 SAFITMFRKTLGKPPARYMAQRQAQRQAPPAVPTPSTPPAHAAAPYFQPTRQASWKPN 298 SAFITMFRKTLGKPPARYMAQRQAQRQAPPAVP PS PPAHAAAPYFQPTRQASWKPN Sbjct: 241 SAFITMFRKTLGKPPARYMAQRQAQRQAPPAVPPPSVPPAHAAAPYFQPTRQASWKPN 298 >gi|300311011|ref|YP_003775103.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 150 bits (380), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 120/219 (54%), Gaps = 3/219 (1%) Query: 35 PLHSHRKGQLVVALRGAVTCETAQGMWIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAP 94 P HSHR+ QL+ L G + TA G W+VPPQ AVWIP G H +R+ C FI P Sbjct: 40 PWHSHRRAQLLYGLSGLMQVITADGAWVVPPQHAVWIPSGREHQSRMLQAVTTCSAFIEP 99 Query: 95 Q-AASMPEQCCTLALSPLLVQMICHLAEQRQDYAPHERTARLAAVLVEELEHSQRHALPL 153 + A + C LA+ PLL +++ Y H R L +L++E+ ++ +P Sbjct: 100 EHAPRVASSCQVLAVRPLLRELLIEATRMDPHYVLHSREENLIRLLLDEIGRAEE--IPA 157 Query: 154 HLPAPQHSRLRAIARHLAEHPADRSTVAQWGQRHAMSERSFARFVQAETGMSFGRWRRQI 213 H+P P RL + P+ RS AQW + +SER+F+R A+TGM F +WR + Sbjct: 158 HVPLPPEPRLGELCHRFLAAPSIRSGPAQWALQLHISERTFSRRFLAQTGMGFQQWRLRA 217 Query: 214 HLMLALQRLASGSSVQRVSQDLGYDSVSAFITMFRKTLG 252 +M A+ RLA G V ++ DLGY+ +AF TMFRK G Sbjct: 218 CVMYAISRLALGQPVTTIAYDLGYERPAAFSTMFRKMTG 256 >gi|300310273|ref|YP_003774365.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 129/234 (55%), Gaps = 6/234 (2%) Query: 34 TPLHSHRKGQLVVALRGAVTCETAQGMWIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIA 93 P+H H +G L+ A G + + G W+VPP +AVW+ GV HS + + Q LF+ Sbjct: 38 VPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLAMPVTLQAYGLFVR 97 Query: 94 PQA-ASMPEQCCTLALSPLLVQMICHLAEQRQDYAPHERTARLAAVLVEELEHSQRHALP 152 A +P C + +SPLL ++I LA+ R++ +R L A+++EE+ + LP Sbjct: 98 QDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALVMEEV--LTQPTLP 155 Query: 153 LHLPAPQHSRLRAIAR---HLAEHPADRSTVAQWGQRHAMSERSFARFVQAETGMSFGRW 209 HLP P +AR L + P D +T A+W R AM +++F R TGM+FG+W Sbjct: 156 FHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRFLQSTGMTFGKW 215 Query: 210 RRQIHLMLALQRLASGSSVQRVSQDLGYDSVSAFITMFRKTLGKPPARYMAQRQ 263 R+Q+ LM +L L G + +V+ GYDS SA+ T F K GKPP+ + R+ Sbjct: 216 RQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAFFPARE 269 >gi|300310311|ref|YP_003774403.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 144 bits (364), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 89/236 (37%), Positives = 131/236 (55%), Gaps = 3/236 (1%) Query: 37 HSHRKGQLVVALRGAVTCETAQGMWIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIA-PQ 95 HSHR+GQL+ A+ G + T QG+W+VPP A+W+PP V H + + L+I Q Sbjct: 40 HSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVPPQVEHEILMLSKVSMRTLYINQAQ 99 Query: 96 AASMPEQCCTLALSPLLVQMICHLAEQRQDYAPHERTARLAAVLVEELEHSQRHALPLHL 155 + EQC L +S LL ++I L + +DYAP R +A +++ EL + A+P+ + Sbjct: 100 GRELGEQCRLLEVSVLLRELILALLAEPRDYAPQSRAGHVAELILSELARAP--AIPVAI 157 Query: 156 PAPQHSRLRAIARHLAEHPADRSTVAQWGQRHAMSERSFARFVQAETGMSFGRWRRQIHL 215 P P RL+AI + P + ++A W S R+ R ETG+ F W +Q+HL Sbjct: 158 PWPGDRRLQAICEAILADPGRQFSLADWAGMGGASVRTVIRLFPKETGLQFRHWVQQVHL 217 Query: 216 MLALQRLASGSSVQRVSQDLGYDSVSAFITMFRKTLGKPPARYMAQRQAQRQAPPA 271 AL RL+ G V V+Q LGY S SAF MFRK L P Y+ +++ +R + PA Sbjct: 218 SEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALRTTPNHYLQRQERRRLSLPA 273 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.130 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 839,588 Number of extensions: 32434 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 5 Length of query: 298 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 213 Effective length of database: 1,217,395 Effective search space: 259305135 Effective search space used: 259305135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)