BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0249.p
         (401 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313524|ref|YP_003777616.1| cyanate permease [Herbaspirillu...   752   0.0  

>gi|300313524|ref|YP_003777616.1| cyanate permease [Herbaspirillum
           seropedicae SmR1]
          Length = 401

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/401 (99%), Positives = 398/401 (99%)

Query: 1   MTLPTPATHPHGVRPVHRSLWLIAGILLIAANLRAPVTAVGPVMGLLQQTFALSAGAAGL 60
           MTLPTPATHPHGV PV RSLWLIAGILLIAANLRAPVTAVGPVMG+LQQTFALSAGAAGL
Sbjct: 1   MTLPTPATHPHGVSPVPRSLWLIAGILLIAANLRAPVTAVGPVMGVLQQTFALSAGAAGL 60

Query: 61  MLTLPLLCFALVSPLAARTARSLGLERTLLLALLLIGAGILLRSSGTVAGLLAGTCIIGC 120
           MLTLPLLCFALVSPLAARTARSLGLERTLLLALLLIGAGILLRSSGTVAGLLAGTCIIGC
Sbjct: 61  MLTLPLLCFALVSPLAARTARSLGLERTLLLALLLIGAGILLRSSGTVAGLLAGTCIIGC 120

Query: 121 GIAGGNVLLPSLLKRDFADDLTRMTAIYALTMNSVSALGSVCAVPLATRLGWAWALAAFI 180
           GIAGGNVLLPSLLKRDFADDLTRMTAIYALTMNSVSALGSVCAVPLATRLGWAWALAAFI
Sbjct: 121 GIAGGNVLLPSLLKRDFADDLTRMTAIYALTMNSVSALGSVCAVPLATRLGWAWALAAFI 180

Query: 181 ALPLVAMLAWLPQLQRDTRPANVPARAASIWRQPLAWQVTFFLGTNSLVYYVVTAWLPSI 240
           ALPLVAMLAWLPQLQRDTRPANVPARAASIWRQPLAWQVTFFLGTNSLVYYVVTAWLPSI
Sbjct: 181 ALPLVAMLAWLPQLQRDTRPANVPARAASIWRQPLAWQVTFFLGTNSLVYYVVTAWLPSI 240

Query: 241 LAANGYSAVQAGNLHGLMQLASALPGLLLVPLGPRIRDHRPVAVSMSAATVLSLVGLIAW 300
           LAANGYSAVQAGNLHGLMQLASALPGLLLVPLGPRIRDHRPVAVSMSAATVLSLVGLIAW
Sbjct: 241 LAANGYSAVQAGNLHGLMQLASALPGLLLVPLGPRIRDHRPVAVSMSAATVLSLVGLIAW 300

Query: 301 PQVSLVWVPLFGFGTGAVLILGLAFVGTRVSTPPQAAALSAMAQSVGYLLAATGPIVMGR 360
           PQ SLVWVPLFGFGTGAVLILGLAFVGTRVSTPPQAAALSAMAQSVGYLLAATGPIVMGR
Sbjct: 301 PQASLVWVPLFGFGTGAVLILGLAFVGTRVSTPPQAAALSAMAQSVGYLLAATGPIVMGR 360

Query: 361 LHDANGGWTPVLALCAGGAVLMGWLGWLAGRPGRVIGASAK 401
           LHDANGGWTPVLALCAGGAVLMGWLGWLAGRPGRVIGASAK
Sbjct: 361 LHDANGGWTPVLALCAGGAVLMGWLGWLAGRPGRVIGASAK 401


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,177,673
Number of extensions: 46664
Number of successful extensions: 339
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 314
Effective length of database: 1,207,925
Effective search space: 379288450
Effective search space used: 379288450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)