BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0248.p
         (414 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313522|ref|YP_003777614.1| 5'-nucleotidase [Herbaspirillum...   625   e-180

>gi|300313522|ref|YP_003777614.1| 5'-nucleotidase [Herbaspirillum
           seropedicae SmR1]
          Length = 316

 Score =  625 bits (1613), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 308/309 (99%), Positives = 308/309 (99%)

Query: 27  MPYDLSDKLVIGISSRALFDLEVENAIYDQQGVDAYAQYQRDHENDPLQPGTAFPLVKAL 86
           MPYDLSDKLVIGISSRALFDLEVENAIYDQQGVDAYAQYQRDHENDPLQPGTAFPLVKAL
Sbjct: 1   MPYDLSDKLVIGISSRALFDLEVENAIYDQQGVDAYAQYQRDHENDPLQPGTAFPLVKAL 60

Query: 87  LQLNELIADRRLVEVVVISRNTPDTGLRAFNAIAAHKLDISRAAFTGGGPTAPYLQAFKI 146
           LQLNELIADRRLVEVVVISRNTPDTGLRAFNAIAAHKLDISRAAFTGGGPTAPYLQAFKI
Sbjct: 61  LQLNELIADRRLVEVVVISRNTPDTGLRAFNAIAAHKLDISRAAFTGGGPTAPYLQAFKI 120

Query: 147 DLFLSRDTGDVQEAIDAGVAAAQLYAAPLDYSAPDKQIRIAFDGDAVLFSAESERIFAEK 206
           DLFLSRDTGDVQEAIDAGVAAAQLYAAPLDYSAPDKQIRIAFDGDAVLFSAESERIFAEK
Sbjct: 121 DLFLSRDTGDVQEAIDAGVAAAQLYAAPLDYSAPDKQIRIAFDGDAVLFSAESERIFAEK 180

Query: 207 GLEAFARHEQRHRKKAMKEGPFAKLLLALSAIQKQFPPAQCPVRIAIVTARNSPAHQRVI 266
           GLEAFARHEQRHRKKAMKEGPFAKLLLALSAIQKQFPPAQCPVRIAIVTARNSPAHQRVI
Sbjct: 181 GLEAFARHEQRHRKKAMKEGPFAKLLLALSAIQKQFPPAQCPVRIAIVTARNSPAHQRVI 240

Query: 267 HTLRTWNVTVDEAFFLGGLNKAEVLQAFGAHMFFDDQEGHVQKAAVVVPSGRVPYKGGTL 326
           HTLRTWNVTVDEAFFLGGLNKAEVLQAFGAHMFFDDQEGHVQKAAVVVPSGRVPYKGGTL
Sbjct: 241 HTLRTWNVTVDEAFFLGGLNKAEVLQAFGAHMFFDDQEGHVQKAAVVVPSGRVPYKGGTL 300

Query: 327 EGARVARAR 335
           EGARVAR R
Sbjct: 301 EGARVARVR 309


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,290,537
Number of extensions: 54681
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,203,190
Effective search space: 392239940
Effective search space used: 392239940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)