BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0235.p
         (566 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313507|ref|YP_003777599.1| polysaccharide biosynthesis pro...  1088   0.0  
gi|300313504|ref|YP_003777596.1| galactose-1-phosphate uridylylt...   140   3e-34

>gi|300313507|ref|YP_003777599.1| polysaccharide biosynthesis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 648

 Score = 1088 bits (2815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/550 (97%), Positives = 545/550 (99%)

Query: 1   MKRPLFKLAIPILALPRAAKRLVAISVDLGICVLTVWLAYYLRLGEFVALSGTALWAVAA 60
           MK+PLFKLAIPILALPRA KRLVA+SVD+G+CVLTVWLAYYLRLGEFVALSGTALWA  A
Sbjct: 1   MKQPLFKLAIPILALPRATKRLVAVSVDMGLCVLTVWLAYYLRLGEFVALSGTALWAAGA 60

Query: 61  SITLALPIFIVSGLYRAIFRYSGWPALLAVARAVGIYGLLYASIFTAISVAGIPRTVGII 120
           S+ LALPIFIVSGLYRAIFRYSGWPALLAVARAVGIYGLLYASIFT+ISV G+PRTVGII
Sbjct: 61  SVMLALPIFIVSGLYRAIFRYSGWPALLAVARAVGIYGLLYASIFTSISVPGVPRTVGII 120

Query: 121 QPILLLLFVGASRALARVWLGDQYLSVLKQASRPKVLIYGAGSTGRQLVAAMASSHEMQV 180
           QPILLLLFVGASRALARVWLGDQYLS+LKQASRPKVLIYGAGSTGRQLVAAMASSHEMQV
Sbjct: 121 QPILLLLFVGASRALARVWLGDQYLSILKQASRPKVLIYGAGSTGRQLVAAMASSHEMQV 180

Query: 181 VGFLDDDDRLHGHVLNGQPIYNPADLSSLASTLSISNVLLAMPSLSRKRRNEILAQIRTA 240
           VGFLDDDDRLHGHVLNGQPIYNPADLSSLASTLSISNVLLAMPSLSRKRRNEILAQIRTA
Sbjct: 181 VGFLDDDDRLHGHVLNGQPIYNPADLSSLASTLSISNVLLAMPSLSRKRRNEILAQIRTA 240

Query: 241 RVAVRTLPSVTDLAQGRVNVSDLRELDIDDLLGREPVMPNHILLAMNVRSKVVMVTGAGG 300
           RVAVRTLPSVTDLAQGRVNVSDLRELDIDDLLGREPVMPNHILLAMNVRSKVVMVTGAGG
Sbjct: 241 RVAVRTLPSVTDLAQGRVNVSDLRELDIDDLLGREPVMPNHILLAMNVRSKVVMVTGAGG 300

Query: 301 SIGSELCRQILAVGPSKLLLIEQSEFALYAIHQQLEEKLADRDIVLVPLLASVQDSERIR 360
           SIGSELCRQILAVGPSKLLLIEQSEFALYAIHQQLEEKLADRDIVLVPLLASVQDSERIR
Sbjct: 301 SIGSELCRQILAVGPSKLLLIEQSEFALYAIHQQLEEKLADRDIVLVPLLASVQDSERIR 360

Query: 361 EIMSTWHPDTVYHAAAYKHVPLVEHNPAEGIKNNVLGTLRTAQAATENGVADFVLISTDK 420
           EIMSTWHPDTVYHAAAYKHVPLVEHNPAEGIKNNVLGTLRTAQAATENGVADFVLISTDK
Sbjct: 361 EIMSTWHPDTVYHAAAYKHVPLVEHNPAEGIKNNVLGTLRTAQAATENGVADFVLISTDK 420

Query: 421 AVRPTNIMGASKRLAEMVLQAIAATSPGTKFSMVRFGNVLGSSGSVVPKFRQQIRDGGPI 480
           AVRPTNIMGASKRLAEMVLQAIAATSPGTKFSMVRFGNVLGSSGSVVPKFRQQIRDGGPI
Sbjct: 421 AVRPTNIMGASKRLAEMVLQAIAATSPGTKFSMVRFGNVLGSSGSVVPKFRQQIRDGGPI 480

Query: 481 TLTHADITRYFMTIPEASQLVIQAGAMAKGGDVFVLDMGQAVRIMDLARRMIELSGLTVK 540
           TLTHADITRYFMTIPEASQLVIQAGAMAKGGDVFVLDMGQAVRIMDLARRMIELSGLTVK
Sbjct: 481 TLTHADITRYFMTIPEASQLVIQAGAMAKGGDVFVLDMGQAVRIMDLARRMIELSGLTVK 540

Query: 541 DELNPEGDIA 550
           DELNPEGDIA
Sbjct: 541 DELNPEGDIA 550


>gi|300313504|ref|YP_003777596.1| galactose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/245 (36%), Positives = 134/245 (54%), Gaps = 11/245 (4%)

Query: 292 VVMVTGAGGSIGSELCRQILAVGPSKLLLIEQSEFALYAIHQQLEEKLADRDIVLVPLLA 351
           V+M+TG  GS G  +  + L  G  ++ +  + E       +Q + ++A  +  L   + 
Sbjct: 6   VLMITGGTGSFGQTVLNRFLNTGVREIRVFSRDE------KKQEDLRIALNNEKLRFYIG 59

Query: 352 SVQDSERIREIMSTWHPDTVYHAAAYKHVPLVEHNPAEGIKNNVLGTLRTAQAATENGVA 411
            V+D + +R  M     D V+HAAA K VP  E  P E +K NV+GT    + ++E GV 
Sbjct: 60  DVRDPDSLRAAMKGV--DYVFHAAALKQVPSCEFYPMEAVKTNVIGTENVLRVSSECGVR 117

Query: 412 DFVLISTDKAVRPTNIMGASKRLAEMVLQAIAATSPG--TKFSMVRFGNVLGSSGSVVPK 469
             V++STDKAV P N MG SK +AE V+ A A T     T F   R+GNV+ S GSV+P 
Sbjct: 118 RVVVLSTDKAVYPINAMGISKAMAEKVMVAAARTQRQGETVFCATRYGNVMASRGSVIPL 177

Query: 470 FRQQIRDGGPITLTHADITRYFMTIPEASQLVIQAGAMAKGGDVFVLDMGQAVRIMDLAR 529
           F  QI+   PIT+T  ++TR+ M++ ++  LV+ A    + GD+FV     A  + DLA 
Sbjct: 178 FVSQIKAEKPITITDPNMTRFLMSLEDSVDLVLYAFQHGQQGDIFV-QKAPASTVADLAS 236

Query: 530 RMIEL 534
            + EL
Sbjct: 237 ALKEL 241


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,654,937
Number of extensions: 69750
Number of successful extensions: 329
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 2
Length of query: 566
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 476
Effective length of database: 1,193,720
Effective search space: 568210720
Effective search space used: 568210720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)