BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0234.p
         (376 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313505|ref|YP_003777597.1| UDP-N-acetylglucosamine 2-epime...   482   e-137
gi|300312055|ref|YP_003776147.1| UDP-N-acetylglucosamine 2-epime...   179   3e-46

>gi|300313505|ref|YP_003777597.1| UDP-N-acetylglucosamine
           2-epimerase [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score =  482 bits (1240), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 222/374 (59%), Positives = 301/374 (80%), Gaps = 2/374 (0%)

Query: 4   LKVMTVVGTRPEIIRLSRVLAKLDQHTDHVLVHTGQNFDYELNEIFFTELSLRRPDHFLE 63
           LKVMT+VGTRPE+I++SRV+A+LDQHT H+LVHTGQN+DYELN++FF +L++R+PDHFLE
Sbjct: 2   LKVMTIVGTRPELIKMSRVIAELDQHTQHILVHTGQNYDYELNQLFFEDLAIRKPDHFLE 61

Query: 64  AVGATAAETVGNIIARIDPLLAQEKPDALLVLGDTNSCLSVIAAKKHHIPIFHMEAGNRC 123
           AVG  AA+T+  +I + D ++ +EKPDA+L+ GDTNSCL+VI+AK+  IP+FHMEAGNRC
Sbjct: 62  AVGVNAAQTIARVIEKSDEVMEKEKPDAVLLYGDTNSCLAVISAKRRKIPVFHMEAGNRC 121

Query: 124 FDQRVPEESNRKVVDHLADINMPYSDIAREYLLREGLAPDRVIKTGSPMSEVLHHYLPQI 183
           FDQRVPEE NRKV+DHL+DIN+  ++ AR YL+ EG+ P+ +IKTGS M EVL HY+P+I
Sbjct: 122 FDQRVPEELNRKVLDHLSDINLVLTEHARRYLIAEGVRPETIIKTGSHMREVLDHYMPKI 181

Query: 184 EASDVLERLHLQEGHYFALSCHREENVDGPGGIENLVKLLNGLAVEHAMPVIMSTHPRTR 243
           ++SD+L R+ L++G YF +S HREENVD P  + ++V+ LN LA ++ +PVI+STHPRT+
Sbjct: 182 QSSDILSRMGLEQGRYFIVSAHREENVDTPENLIDMVETLNALAQQYQVPVIVSTHPRTQ 241

Query: 244 KRIDALGV-KLDSRVQLLKPLGLPDYVQLQRKARAVLSDSGTITEESNILHFPALNIRQA 302
           KR+DAL +  LDSR+Q LKP G  DYV+LQ +A  V+SDSGTITEE ++L+ PA+ IR A
Sbjct: 242 KRLDALNIGNLDSRIQFLKPFGFCDYVKLQMEALCVVSDSGTITEEGSLLNLPAVTIRNA 301

Query: 303 HERPEGMEEGAVMMTGLSLERVRQGLAVLESQPRGGAPRLIQPVRDYAVPNVSDKVLRII 362
           HERPEGM+ G ++M GL  +RV   +AV+ +Q + G+ R++  V DY    VS K+LRI+
Sbjct: 302 HERPEGMDVGTLIMAGLKKDRVLDAVAVIIAQHQRGS-RVVAAVEDYEALAVSKKILRIV 360

Query: 363 LSYTDYVKRVVWQE 376
           LSYTDYV R VW++
Sbjct: 361 LSYTDYVNRTVWRK 374


>gi|300312055|ref|YP_003776147.1| UDP-N-acetylglucosamine
           2-epimerase [Herbaspirillum seropedicae SmR1]
          Length = 378

 Score =  179 bits (454), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 112/327 (34%), Positives = 177/327 (54%), Gaps = 16/327 (4%)

Query: 5   KVMTVVGTRPEIIRLSRVLA---KLDQHTDHVLVHTGQNFDYELNEIFFTELSLRRPDHF 61
           +++ +VG RP  ++++ ++A   +L +    VL+HTGQ++D  +N  +F  L +  PD  
Sbjct: 6   RILCIVGARPNFMKIAPIMAAFSQLGERVQAVLLHTGQHYDVAMNHQYFEALGIPAPDIN 65

Query: 62  LEAVGATAAETVGNIIARIDPLLAQEKPDALLVLGDTNSCLSV-IAAKKHHIPIFHMEAG 120
           LE    + A+    I+   +P L Q +P A+LVLGD NS L+  + A K  +P+ H+EAG
Sbjct: 66  LEIGSGSHAQQTAAIMQHFEPALEQVQPAAVLVLGDINSTLACALVAVKKGVPVVHVEAG 125

Query: 121 NRCFDQRVPEESNRKVVDHLADINMPYSDIAREYLLREGLAPDRVIKTGSPMSEVLHH-- 178
            R  D+ +PEE NR + D ++D+       A + L REG+A +RV   G+ M + L H  
Sbjct: 126 LRSNDRSMPEEINRILTDQISDLLYTTEANALQNLTREGIAAERVRFVGNVMIDTLRHNL 185

Query: 179 ----YLPQIEASDVLERLHLQEGHYFALSCHREENVDGPGGIENLVKLLNGLAVEHAMPV 234
                LPQI A+   E     +G Y  L+ HR  NVD P  +  L++ +    +   +PV
Sbjct: 186 ARAISLPQILATQGREDFRHDKG-YAVLTLHRPSNVDDPAVLRALLETVR--TISATLPV 242

Query: 235 IMSTHPRTRKRIDALGVK--LD-SRVQLLKPLGLPDYVQLQRKARAVLSDSGTITEESNI 291
           +   HPRTR  I+  G+   +D  ++  L P+G  + + L R AR  L+DSG I EE+  
Sbjct: 243 VFPLHPRTRGMIEKFGLAGLIDIPQILQLPPMGYLEMLGLMRDARLALTDSGGIQEETTA 302

Query: 292 LHFPALNIRQAHERPEGMEEGAVMMTG 318
           L  P + +R   ERP  +E+G   + G
Sbjct: 303 LGVPCVTLRHNTERPITVEQGTNTLAG 329


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,185,872
Number of extensions: 50704
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,207,925
Effective search space: 349090325
Effective search space used: 349090325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)