BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0231.p
         (414 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313502|ref|YP_003777594.1| glycosyltransferase group 1 pro...   293   1e-80

>gi|300313502|ref|YP_003777594.1| glycosyltransferase group 1
           protein [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score =  293 bits (751), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 168/410 (40%), Positives = 246/410 (60%), Gaps = 14/410 (3%)

Query: 1   LKLLVVTQYFYPENFRVNELVSDLVKRGHEVTVLTGMPNYPQGRFFPGYGWRGPRREQFE 60
           +++L+V+QYF+PE FR+NEL   LV+RG +V VLTG PNYP+G+ + GY  RG  RE ++
Sbjct: 1   MRVLIVSQYFWPEGFRINELAESLVQRGIDVDVLTGKPNYPEGKIYEGYKARGCVRESWQ 60

Query: 61  GATVIRTSLIPRGNGGAVRLILNYASFALFASLAALWRLPR--QDAIFVFEVSPVTVGIP 118
           GA + R  L PRG   A RL LNY SF L A++A  W+L R   D IFV+  SP+   +P
Sbjct: 61  GANIFRVPLFPRGFRSASRLALNYLSFILSAAIAGTWQLRRIKSDVIFVYAPSPLLQALP 120

Query: 119 AIVASWRHKAPILFWVLDLWPQSLQATGTVRAAWALKLVERGVRWIYSRCALILGQSRSF 178
           A++  W  + P++ +V DLWP+SL+ATG VR   A+++VE  V+ IY R  LIL  S  F
Sbjct: 121 ALLIGWFKRIPVVLYVQDLWPESLEATGYVRNRLAIRMVEWVVKLIYRRSDLILVSSLPF 180

Query: 179 LDSIGELGTDPSRLRYFPNWIEAEYT------QAVVPAVKPGRGEFRIVYAGNIGVAQDF 232
             SI    +  + + Y+PN ++A +       +  VPA+  G   FR+++AGN+G AQ  
Sbjct: 181 RGSIQRF-SPSAEIVYYPNSVDASFCDPQSGLKPDVPALDEG---FRVIFAGNVGAAQAV 236

Query: 233 PAIIEAAGQLAKTTPGAKWVLAGDGRMAPWVKAEISKRGLDQQFELLGQLPASRMPELFA 292
             I++AA +L K     + V+ G G    W++ +I +R LD  F L G+ P   MP L +
Sbjct: 237 HVIVDAAQRL-KEHRDIRLVVLGSGSELEWMRTQIQERELDNLF-LAGRFPVQAMPNLLS 294

Query: 293 GADVLLVALRADPVFSLTIPGKLQSYMASGKPILAMIDGEAARVVQEAGAGLVAPAGDAT 352
            AD LLV L    +F+ T+P K+Q+YMA G+PI+A ++GE AR+VQEA AG+   A D  
Sbjct: 295 RADALLVTLADRKIFAETVPNKIQAYMAVGRPIIASMNGEGARIVQEANAGIAVAAEDGA 354

Query: 353 CLARFATQLAAMSPEELTAMGLRAREYATREFGRELLIDQLECWLQEAVQ 402
            +A    +L AMS  +   +G   + Y  + F  E L+D L   L + ++
Sbjct: 355 AMADAVLRLHAMSQADRDQLGENGKRYYRQNFDHEQLVDDLVGHLTKMMK 404


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,402,078
Number of extensions: 63026
Number of successful extensions: 221
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 2
Length of query: 414
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,203,190
Effective search space: 392239940
Effective search space used: 392239940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)