BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0230.p
         (384 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311312|ref|YP_003775404.1| glycosyl transferase group 1 fa...    61   1e-10

>gi|300311312|ref|YP_003775404.1| glycosyl transferase group 1
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 419

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 7/179 (3%)

Query: 205 RFVFLGRLHPVKGVDLLIEAFGK-ARLEDGWELVIAGPEEIPDYAAQLRAMAAASSRAAH 263
           R V +GRL   KG  LL+EA  +  R    +ELV+AG  E+    AQ+    A      H
Sbjct: 225 RLVCIGRLCEQKGQLLLVEAAAQLMRRGVAFELVLAGDGEM---RAQIEERIAHHDLQQH 281

Query: 264 IRFVGPVYGAEKANLLQSAWAVIVPSRTEVIGMVNLEAASLATPTVTTPNTGLDEWA--- 320
           IR  G +  A+    L +A A+++PS  E + +V +EA +L  P +TT   G+ E     
Sbjct: 282 IRITGWISSAQVREELLAARAMVLPSFAEGLPVVIMEAMALRRPVLTTYIAGIPELVIHE 341

Query: 321 QIGGILAADDAAALQAGLQACADWSLQERLRRGQESRRHVLHRYSLDTVGQQWLQLYRS 379
           + G +  A D   L   +QAC   + ++    GQ ++   + R+S++    +  +L+ +
Sbjct: 342 ENGWLFPAGDIERLTDAMQACLQATPEQLAAMGQAAQLRAVERHSVNVEAAKLARLFNA 400


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,211,432
Number of extensions: 49471
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,207,925
Effective search space: 358753725
Effective search space used: 358753725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)