BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0222.p
         (296 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311328|ref|YP_003775420.1| glycosyltransferase A protein [...    70   2e-13

>gi|300311328|ref|YP_003775420.1| glycosyltransferase A protein
           [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 17/240 (7%)

Query: 6   VSVIIPTYNHAHFLTAALDSVRNQTCADWEAIVIDNFSSDDTVAVVERF--GDPRIRLVQ 63
           + V++P  N   FL  +LDS++ QT  DW  +V+D+ S+D +  +VER+   D RI L +
Sbjct: 4   IDVLLPVKNGVDFLAESLDSLQAQTVTDWRVLVLDHGSTDGSAEMVERYHERDARIELHR 63

Query: 64  FANQGIIASSRNHGIALTTAPYVAFLDSDDTWESEKLELSLAKLQEGYDLVC---HAETW 120
           F     ++   N G+ ++   YV   D+DD    E++ +SLA  +     V     A+  
Sbjct: 64  FPEADGLSGLLNKGLEISDCRYVMRHDADDVCYPERMAISLAAFEANPQCVAIGGQADVI 123

Query: 121 VGPGSRRREVIYGPRERASYDSMLFDGNCISTSAVVVARKLLEQA--------GGFSEHA 172
              G    E+      +    + LF       +A++   ++  Q         G F +  
Sbjct: 124 DAKGGPIHEMKMPVGVQRVAAASLFRNPIAHPTAMLDFAEVQRQGIRYGVDFMGVFPQEQ 183

Query: 173 SF---NTAEDYDLWLKLAALGARMEFIPRVLGQYLIHTTNQSKTPLRNMQAISAVFEHHL 229
                N AEDY L+ +L  + ++   +P+ L +Y  H  N S T       +S     +L
Sbjct: 184 QMMVKNLAEDYFLFGQL-GIQSKCNNVPQKLIKYRWHGNNVSATRFDEQMKVSLQVSRYL 242


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 912,251
Number of extensions: 34757
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,217,395
Effective search space: 256870345
Effective search space used: 256870345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)