BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0210.p
         (256 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313349|ref|YP_003777441.1| imidazole glycerol-phosphate sy...    86   4e-18
gi|300313489|ref|YP_003777581.1| imidazoleglycerol-phosphate syn...    82   6e-17

>gi|300313349|ref|YP_003777441.1| imidazole glycerol-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score = 85.5 bits (210), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 120/247 (48%), Gaps = 11/247 (4%)

Query: 2   LKKRLIGVVTVKDGWAVQSFGYRRYLPLGKPQWIVENLDRWGADEILVLCMDRSARQAGP 61
           L KR+I  + V  G  V+   +      G P  I    D  GADE+  L  D +A   G 
Sbjct: 3   LAKRIIPCLDVTAGRVVKGVNFLELRDAGDPVEIARRYDEQGADELTFL--DITASSDGR 60

Query: 62  DFAL--LESLASMGLGTPLIYGGGIASAEDGVKVIQAGADRISIDALLHDAPQVLIELGY 119
           D  L  +E++AS  +  PL  GGG+ + ED  +++ AGAD++ I+      PQ++ +   
Sbjct: 61  DLILDIIEAVASQ-VFIPLTVGGGVRAVEDVRRLLNAGADKVGINTSAVTNPQLVADAAS 119

Query: 120 QLGVQALIAAVPMRMHNQMPCWHDYRH--RRDLPLAALE--KVLGRGLASELLVIDCEHE 175
           + G Q ++ A+  +       W  Y H  R+   L A+E  + + +  A E+L+   + +
Sbjct: 120 KYGSQCIVVAIDAKRAGDGK-WEVYTHGGRKATGLDAVEWARKMAQLGAGEILLTSMDRD 178

Query: 176 GRAASFDTHLLDALPDW-NMPLLAFGGISEASQMEELLARPRVAAVGVGNFLSYRELAIQ 234
           G  + FD  L  A+ +  ++P++A GG+     + + + + +  AV   +   Y +  +Q
Sbjct: 179 GTKSGFDLDLTRAVSEAVSIPVIASGGVGGLQDLADGITKGKADAVLAASIFHYGQHTVQ 238

Query: 235 QYKKVLA 241
           + K+ +A
Sbjct: 239 EAKRFMA 245


>gi|300313489|ref|YP_003777581.1| imidazoleglycerol-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 81.6 bits (200), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 114/234 (48%), Gaps = 5/234 (2%)

Query: 1   MLKKRLIGVVTVKDGWAVQSFGYRRYLPLGKPQWIVENLDRWGADEILVLCMDRSARQAG 60
           ML+ R+I  + ++    V++  +  +  +G P   V   +    DE+  L +  S  + G
Sbjct: 1   MLRTRVIPALLLQHESLVKTQRFSTFDYVGDPCNTVRIFNELEVDELFFLDIAASREKKG 60

Query: 61  PDFALLESLASMGLGTPLIYGGGIASAEDGVKVIQAGADRISIDALLHDAPQVLIELGYQ 120
           P+  LL  +A+     PL YGGGI S +D   V   G ++++++    + P ++ E+  +
Sbjct: 61  PNLQLLADIANECF-MPLGYGGGIRSLDDARSVFSIGFEKVAVNTHALENPSLISEIATE 119

Query: 121 LGVQALIAAVPMR---MHNQMPCWHDYRHRRDLPLAALEKVLGRGLASELLVIDCEHEGR 177
            G QA++ +V ++   +  Q    H  RH       A  +   R  A EL +   + EG 
Sbjct: 120 YGSQAVVVSVDVKGGVLGGQTVRSHSGRHNTGRDPVAWAQEAERLGAGELFLTAIDREGT 179

Query: 178 AASFDTHLLDALPD-WNMPLLAFGGISEASQMEELLARPRVAAVGVGNFLSYRE 230
            + FD  L+  + D  ++P++A GG    S + +++ +   +AV +G+ + Y++
Sbjct: 180 WSGFDIDLVKKVTDAVSIPVIAHGGAGSLSDIRKVVKQAGASAVALGSMVVYQK 233


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 870,537
Number of extensions: 38530
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 256
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,226,865
Effective search space: 212247645
Effective search space used: 212247645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)