BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0201.p (557 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 169 6e-43 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 167 3e-42 gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 157 2e-39 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 152 5e-38 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 148 9e-37 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 169 bits (427), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 163/561 (29%), Positives = 269/561 (47%), Gaps = 32/561 (5%) Query: 5 SFAEVLSLGAVMPFLGVLTSP------DKVYAHPAAQSVIQLLGITAPSQLLLPLTLAFA 58 + AEVL + V+ +G++T DKV + A + L + A + L A Sbjct: 162 TLAEVLLISLVLQLIGLITPMFFQVVMDKVLVNHAMMT----LNVIA-----VGLIAATV 212 Query: 59 VAALLNGAMRLLLLWSSTRMSVLTGADLSIDIYQRTLYQPYSLHISRNSSEIINAI---- 114 A+L G + +S+++ V G+ L + L P S R + + I + Sbjct: 213 FEAVLTGIRTAIFANASSKIDVELGSRL----FSHLLSLPLSYFQVRRAGDSIARVRELE 268 Query: 115 STKTGVTIHVLLMILNLLSSIVILGAILLALLAVDTKIALVSMGGFALIYGGVIFFTRRS 174 + ++ +T + + ++L+++ S V LG +L +++ + I L S+ + L+ R Sbjct: 269 NIRSFLTGNAMTLVLDIMFSFVFLGVMLWYSVSL-SLIVLASIPVYVLLSLVFTPLLRER 327 Query: 175 LLENSELVARETSLVIKSLQEGLGGIRDVLLDGSQALYCEIYRQSDTRARTAQGNSSFLA 234 L + A S ++++L G+ ++ + ++ + + A N S LA Sbjct: 328 LNDKFNKSAENQSFLVETL-TGMDTVKAMAVEPRWQQKWDKQLAAYVAAGLTTTNISLLA 386 Query: 235 SAPRFAVEALAMLFIAGLAYFLALEPDGIVRAIPVLGALALGAQRLLPIMQQAFASWASI 294 S V L + I L L ++ + V + LA Q PI++ A W Sbjct: 387 SGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELVAFNMLA--GQVASPILRLA-QLWNDF 443 Query: 295 KSNQASLSDAMDLLEQPLPDWAGTAAPTPIPFERDIGLKHLSFSYNQQGPMVLADLNLTI 354 + S+S D+L+ + AG P I +SF Y + P V+ L+L I Sbjct: 444 QQIGISMSRLADVLD-ARTEVAGNRTRLP-RVNGAISFDLVSFRYRPETPEVIRGLSLQI 501 Query: 355 PRGARIGFIGPTGSGKSTLLDIIMGLLCATDGELQIDGQPITETNRRAWQAHLAHVPQSV 414 G IG +G +GSGKSTL ++ L G + +DGQ I + + + + V Q Sbjct: 502 RPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQDIAIIDTASLRQQIGVVLQEN 561 Query: 415 FLADTSIEENIAFGVPKHMIDRERVRQAALQAQIAETIEALPAKYEAMVGERGVRLSGGQ 474 L SI +NIA P I E++ +AA A + I LP Y+ MVGE+G LSGGQ Sbjct: 562 TLFSRSIRDNIALADPSTPI--EQIIEAAKLAGAHDFICELPEGYDTMVGEQGSGLSGGQ 619 Query: 475 RQRLGIARALYKQANVIIFDEATSALDSETERAVMESIDALDANLTILIIAHRISTLRSC 534 RQR+ IARAL ++IFDEATSALD E+E+ + +++ + A T+LIIAHR+S +R Sbjct: 620 RQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDA 679 Query: 535 DQIFELKKGRLAWKGSYPELV 555 D+I +++GR+A GS+ EL+ Sbjct: 680 DRIIVMERGRVAESGSHDELI 700 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 167 bits (422), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 97/266 (36%), Positives = 155/266 (58%), Gaps = 5/266 (1%) Query: 291 WASIKSNQASLSDAMDLLEQPLPDWAGTAAPTPIPFE-RDIGLKHLSFSYNQQGPMVLAD 349 + IK + A + LLE+ + A +A P+ + ++ H+ FSY ++ +L D Sbjct: 323 YREIKQSLADMERLFSLLEEH-REVADSADAKPLKTQGANLHFDHVDFSY-ERNRQILFD 380 Query: 350 LNLTIPRGARIGFIGPTGSGKSTLLDIIMGLLCATDGELQIDGQPITETNRRAWQAHLAH 409 ++ T+ G +G +GSGKSTL ++ G ++IDGQ + + + + + Sbjct: 381 VDFTVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGI 440 Query: 410 VPQSVFLADTSIEENIAFGVPKHMIDRERVRQAALQAQIAETIEALPAKYEAMVGERGVR 469 VPQ L + +IE NIA+G P RE++ AA A I + IE+LP Y +MVGERG++ Sbjct: 441 VPQDTVLFNDTIEYNIAYGKPG--ATREQIVAAAKAAYIHDFIESLPDGYASMVGERGLK 498 Query: 470 LSGGQRQRLGIARALYKQANVIIFDEATSALDSETERAVMESIDALDANLTILIIAHRIS 529 LSGG++QR+ IAR L K ++IFDEATSALDS E+A+ + ++ + T L+IAHR+S Sbjct: 499 LSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLS 558 Query: 530 TLRSCDQIFELKKGRLAWKGSYPELV 555 T+ + QI L GR+ +G++ L+ Sbjct: 559 TIVNAQQILVLDHGRIVERGTHAGLL 584 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 157/279 (56%), Gaps = 15/279 (5%) Query: 284 MQQAFASWASIKSNQASLSDAMDLLEQPLPDWAGTAAPTPIPFERDIGLKHLSFSYNQQG 343 M F +++ +L+ A D+ + P A P + + ++ + +SFSY Sbjct: 321 MSSLFEHVGTVQDGINTLARAHDVKDAP------DAQPLKVS-QGELRFEGVSFSYGGAA 373 Query: 344 PMVLAD-LNLTIPRGARIGFIGPTGSGKSTLLDIIMGLLCATDGELQIDGQPITETNRRA 402 P + D L+L I G +IG +G +G+GKST++++++ G + IDGQ I + + Sbjct: 374 PRPVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDS 433 Query: 403 WQAHLAHVPQSVFLADTSIEENIAFGVPKHMIDRERVRQAALQAQIAETIEALP-----A 457 +A + V Q L S+ ENI +G P D E + AA +A+ + I L Sbjct: 434 LRAQIGMVTQDTSLLHRSVRENITYGRPD-ASDAE-MTHAAERAEAHDFIGTLADAKGRT 491 Query: 458 KYEAMVGERGVRLSGGQRQRLGIARALYKQANVIIFDEATSALDSETERAVMESIDALDA 517 Y+A VGERGV+LSGGQRQR+ IAR + K A +++ DEATSALDSE E A+ S+ L Sbjct: 492 GYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLME 551 Query: 518 NLTILIIAHRISTLRSCDQIFELKKGRLAWKGSYPELVA 556 T++ IAHR+ST+ + D++ L +GR+ +GS+ EL+A Sbjct: 552 GKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGSHAELLA 590 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 152 bits (385), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 132/222 (59%), Gaps = 2/222 (0%) Query: 334 HLSFSYNQQGPMVLADLNLTIPRGARIGFIGPTGSGKSTLLDIIMGLLCATDGELQIDGQ 393 + F+Y + L ++NL + G I F+G +G GKSTL+ +I G + GE+++DG+ Sbjct: 339 EVGFAYPGHEQLALKNINLHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGR 398 Query: 394 PITETNRRAWQAHLAHVPQSVFLADTSIEENIAFGVPKHMIDRERVRQAALQAQIAETIE 453 I + + + +A V Q+ L D ++ NIA+G D RV A A + + + Sbjct: 399 DIETISLPSLRQQIAMVNQNTVLFDDTLAANIAYGDANP--DPARVEAAVEAAHLTDVVA 456 Query: 454 ALPAKYEAMVGERGVRLSGGQRQRLGIARALYKQANVIIFDEATSALDSETERAVMESID 513 LP + +G+ G RLSGGQRQR+ IARA+YK A ++I DEATSALD+E+ERAV ++D Sbjct: 457 GLPEGLQTRLGDNGSRLSGGQRQRVAIARAIYKDAPILILDEATSALDTESERAVQAALD 516 Query: 514 ALDANLTILIIAHRISTLRSCDQIFELKKGRLAWKGSYPELV 555 L T +IAHR+ST+ D+I L G++A G++ L+ Sbjct: 517 RLMQGRTTFVIAHRLSTIERADRIVVLAHGQIAEIGTHQALL 558 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 148 bits (374), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 137/227 (60%), Gaps = 3/227 (1%) Query: 332 LKHLSFSY-NQQGPMVLADLNLTIPRGARIGFIGPTGSGKSTLLDIIMGLLCATDGELQI 390 ++ + F Y ++ G L L+LT+ G + +GP+G+GK+TL +++ G++ + Sbjct: 375 VQGVDFHYPSRPGHPSLTQLSLTVQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQGQILL 434 Query: 391 DGQPITETNRRAWQAHLAHVPQSVFLADTSIEENIAFGVPKHMIDRERVRQAALQAQIAE 450 DG I + +A + + VPQ + + ENI FG P+ D E V AA A E Sbjct: 435 DGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPEAS-DAE-VIAAAQMAAAHE 492 Query: 451 TIEALPAKYEAMVGERGVRLSGGQRQRLGIARALYKQANVIIFDEATSALDSETERAVME 510 IE LP Y +GERGVRLSGGQRQR+ IARAL K +++ DEATSALD+E+ER V Sbjct: 493 FIERLPGSYACFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQG 552 Query: 511 SIDALDANLTILIIAHRISTLRSCDQIFELKKGRLAWKGSYPELVAR 557 +++A T L+IAHR++T++ D+I L+ GR+ G++ ELVAR Sbjct: 553 ALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVAR 599 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,517,826 Number of extensions: 59202 Number of successful extensions: 593 Number of sequences better than 1.0e-08: 121 Number of HSP's gapped: 485 Number of HSP's successfully gapped: 132 Length of query: 557 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 467 Effective length of database: 1,193,720 Effective search space: 557467240 Effective search space used: 557467240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)