BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0199.p
         (396 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313476|ref|YP_003777568.1| 2-polyprenyl-6-methoxyphenol hy...   773   0.0  
gi|300310036|ref|YP_003774128.1| 2-octaprenyl-6-methoxyphenol hy...    92   1e-19

>gi|300313476|ref|YP_003777568.1| 2-polyprenyl-6-methoxyphenol
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 410

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/388 (99%), Positives = 387/388 (99%)

Query: 9   GDGAVGKTAALGLAQAGFKVTLLAPPPKAAPPDTASWDVRVYALNHTAQRLLSSVRVWDA 68
           GDGAVGKTAALGLAQAGFKVTLLAPPPKAAPPDTASWDVRVYALNHTAQRLLSSVRVWDA
Sbjct: 23  GDGAVGKTAALGLAQAGFKVTLLAPPPKAAPPDTASWDVRVYALNHTAQRLLSSVRVWDA 82

Query: 69  MEGERIAAVDNMTVHGDGVPDKARPGLLSFDAYAARTDALAWIIEDRNLDQALDAALRFA 128
           MEGERIAAVDNMTVHGDGVPDKARPGLLSFDAYAARTDALAWI+EDRNLDQALDAALRFA
Sbjct: 83  MEGERIAAVDNMTVHGDGVPDKARPGLLSFDAYAARTDALAWIVEDRNLDQALDAALRFA 142

Query: 129 PNIRVVQGRATALAVLGETATLTLESGQSLSASLVIGADGANSWVRGQCDIGLDYRAYGQ 188
           PNIRVVQGRATALAVLGETATLTLESGQSLSASLVIGADGANSWVRGQCDIGLDYRAYGQ
Sbjct: 143 PNIRVVQGRATALAVLGETATLTLESGQSLSASLVIGADGANSWVRGQCDIGLDYRAYGQ 202

Query: 189 NAIVTNFSCELPHRGVAYQWFSPTEGVIALLPLPGNRVSLVWSAPQALADQLLKLPLSAL 248
           NAIVTNFSCELPHRGVAYQWFSPTEGVIALLPLPGNRVSLVWSAPQALADQLLKLPLSAL
Sbjct: 203 NAIVTNFSCELPHRGVAYQWFSPTEGVIALLPLPGNRVSLVWSAPQALADQLLKLPLSAL 262

Query: 249 AERLAQWAAPVLGALTPLQPEVAKAFPLRLIKPRAMIAPRVALIGDAAHVVHPMAGHGMN 308
           AERLAQWAAPVLGALTPLQPEVAKAFPLRLIKP AMIAPRVALIGDAAHVVHPMAGHGMN
Sbjct: 263 AERLAQWAAPVLGALTPLQPEVAKAFPLRLIKPHAMIAPRVALIGDAAHVVHPMAGHGMN 322

Query: 309 LGFGDVAALIDILLKREPQYDCGDERVLRRYARARKEEVLLMQIATDGLHRIFSTEAEPV 368
           LGFGDVAALIDILLKREPQYDCGDER+LRRYARARKEEVLLMQIATDGLHRIFSTEAEPV
Sbjct: 323 LGFGDVAALIDILLKREPQYDCGDERLLRRYARARKEEVLLMQIATDGLHRIFSTEAEPV 382

Query: 369 RLVRNLGMSLLNRLPVLKRRLIAHALGQ 396
           RLVRNLGMSLLNRLPVLKRRLIAHALGQ
Sbjct: 383 RLVRNLGMSLLNRLPVLKRRLIAHALGQ 410


>gi|300310036|ref|YP_003774128.1| 2-octaprenyl-6-methoxyphenol
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 382

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 184/393 (46%), Gaps = 33/393 (8%)

Query: 9   GDGAVGKTAALGLAQAGFKVTLLAPPPKAAPPDTASWDVRVYALNHTAQRLLSSVRVWDA 68
           G G VG++ A  LA+       +A     +P + A+ D R  AL++ ++++L  +  WD 
Sbjct: 12  GGGPVGQSVAGLLARRQLPAARIALVDMKSP-EQAAADPRTIALSYGSRQILDELGAWDD 70

Query: 69  MEGERIAAVDNMTVHGDGVPDKARPGLLSFDAYAARTDALAWIIEDRNLDQALDAALRFA 128
           + G    A++   +H   V  +   G    D    +  AL ++     +++AL +A+  A
Sbjct: 71  I-GRSATAIEQ--IH---VSRRGHFGRTLLDRKDYQLPALGYVARYGEVNRALASAI--A 122

Query: 129 P-NIRVVQ-GRATALAVLGETATLTLESGQSLSASLVIGADGANSWVRGQCDIGLDYRAY 186
           P  + +++   A  +    +   +TL+ G+ L A LVI A+G    V G+       R Y
Sbjct: 123 PLGLSLMRPAEAQQIEEEDQHVAVTLKDGRILRAHLVIQAEGG---VFGEQQHKTLQRDY 179

Query: 187 GQNAIVTNFSCE--LPHRGVAYQWFSPTEGVIALLPLPGNRVSLVWSAPQALADQLLKLP 244
            Q  I+ +   +  + HR  A++ F+  EG +ALLP   +  +LVW    A  +QL+ L 
Sbjct: 180 QQLGIIAHVQADGVIAHR--AFERFT-DEGPLALLP-QDDGYALVWCVRPATGEQLMALE 235

Query: 245 LSALAERLAQWAAPVLGALTPLQPEVAKAFPLRLIKPRAMIAPRVALIGDAAHVVHPMAG 304
            +     L +     +G  T + P    AFPL L   R   + RV  IG+AA  +HP+AG
Sbjct: 236 DAGFLAALQRTFGERVGRFTRISPR--HAFPLGL-NARPGQSRRVVAIGNAAQTLHPVAG 292

Query: 305 HGMNLGFGDVAALIDILLKR-EPQYDCGDERVLRRYARARKEEVLLMQIATDGLHRIF-- 361
            G+NLG  D   L D+L +   PQ        L+ + R R ++  L    TD + RIF  
Sbjct: 293 QGLNLGLRDARVLADVLAREISPQ-------ALQAFERQRGQDRSLTIRLTDLMARIFAG 345

Query: 362 STEAEPVRLVRNLGMSLLNRLPVLKRRLIAHAL 394
           S +  P++    L +  ++ LP  +  L  H +
Sbjct: 346 SPQGSPLQAALGLSLGAIDLLPGARGLLAEHMM 378


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,349,019
Number of extensions: 59450
Number of successful extensions: 230
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,207,925
Effective search space: 373248825
Effective search space used: 373248825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)