BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0195.p
         (249 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313472|ref|YP_003777564.1| hypothetical protein Hsero_4186...   449   e-127

>gi|300313472|ref|YP_003777564.1| hypothetical protein Hsero_4186
           [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score =  449 bits (1154), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/249 (96%), Positives = 244/249 (97%), Gaps = 2/249 (0%)

Query: 1   MAIGNNNGVDTKSLLPSTSTKLPGVSAGSTSESGKQPANAASPAVSDKIAEARKANLLTE 60
           MAIGNNNGVDTKSLLPST  KLP V+AGSTSES +Q ANAASPAVSDKIAEA+KANLLTE
Sbjct: 1   MAIGNNNGVDTKSLLPST--KLPSVNAGSTSESDRQSANAASPAVSDKIAEAKKANLLTE 58

Query: 61  AGAKAQFNLSIVQASLEVSLQTQNDPLSLVYKTAIENINDVLRPQLGDNAIQNTASQDNT 120
           AGAKAQFNLSIVQASLEVSLQTQNDPLSLVYKTAIENINDVLRPQLGDNAIQNTASQDNT
Sbjct: 59  AGAKAQFNLSIVQASLEVSLQTQNDPLSLVYKTAIENINDVLRPQLGDNAIQNTASQDNT 118

Query: 121 PEATAGRIVSFITNMFDLFKKNNPDKDDSSNIDDYMKLIFKGVDQGFKEARGILESLSVL 180
           PEATAGRIVSFITNMFDLFKKNNPDKDDSSNIDDYMKLIFKGVDQGFKEARGILESLSVL
Sbjct: 119 PEATAGRIVSFITNMFDLFKKNNPDKDDSSNIDDYMKLIFKGVDQGFKEARGILESLSVL 178

Query: 181 QGDIADNIDKTYDLVQKSLNDFINKVKGAKPDTEEGQGQNDGQGGTVVASETTVSISISV 240
           QGDIADNIDKTYDLVQKSLNDFINKVKGAKPDTEEGQGQNDGQGGTVVASETTVSISISV
Sbjct: 179 QGDIADNIDKTYDLVQKSLNDFINKVKGAKPDTEEGQGQNDGQGGTVVASETTVSISISV 238

Query: 241 SQTRISTTA 249
           SQTRIST+A
Sbjct: 239 SQTRISTSA 247


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.125    0.329 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 578,075
Number of extensions: 20649
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,226,865
Effective search space: 203659590
Effective search space used: 203659590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 129 (54.3 bits)