BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0192.p (670 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313469|ref|YP_003777561.1| fimbrial type-4 assembly signal... 1325 0.0 gi|300310140|ref|YP_003774232.1| type II/III HrcC transmembrane ... 86 8e-18 >gi|300313469|ref|YP_003777561.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 674 Score = 1325 bits (3430), Expect = 0.0, Method: Compositional matrix adjust. Identities = 667/670 (99%), Positives = 669/670 (99%) Query: 1 LLLMGVLILSAPALAGPRLHALDIEARDEATTLTLRLDQTLPLSQIHHFQLLDPPQLVLD 60 LLLMGVLILSAPALAGPRLHALDIEARDEATTLTLRLDQTLPLSQIHHFQLLDPPQLVLD Sbjct: 5 LLLMGVLILSAPALAGPRLHALDIEARDEATTLTLRLDQTLPLSQIHHFQLLDPPQLVLD 64 Query: 61 LPDTTLAAGMARQFAASGLLKRVTLASDGERLRLLASLKRPLHYQLQVQDEQVQVALSPL 120 LPDTTLAAGMARQFAASGLLKRVTLASDGERLRLLA+LKRPLHYQLQVQDEQVQVALSPL Sbjct: 65 LPDTTLAAGMARQFAASGLLKRVTLASDGERLRLLATLKRPLHYQLQVQDEQVQVALSPL 124 Query: 121 PPQAPTALGGIGFQRGSAGEGRLDVDLGSTAPVVQVRQQGQRLIVDIGGTTLPTGSARQV 180 PPQAPTALGGIGFQRGSAGEGRLD+DLGSTAPVVQVRQQGQRLIVDIGGTTLPTGSARQV Sbjct: 125 PPQAPTALGGIGFQRGSAGEGRLDIDLGSTAPVVQVRQQGQRLIVDIGGTTLPTGSARQV 184 Query: 181 EVGDFATPVTQYQAYPYENGVRLAIHAQGLWRYQAVQRGQQLRIDVLPVSTDPHRIAPDK 240 EVGDFATPVTQYQAYPYENGVRLAIHAQGLWRYQAVQRGQQLRIDVLPVS DPHRIAPDK Sbjct: 185 EVGDFATPVTQYQAYPYENGVRLAIHAQGLWRYQAVQRGQQLRIDVLPVSADPHRIAPDK 244 Query: 241 DYQGARLSLNFQNIEVRTALQVLADFTGLNIIASDAVTGQLSLRLKDVPWEQALEMILQA 300 DYQGARLSLNFQNIEVRTALQVLADFTGLNIIASDAVTGQLSLRLKDVPWEQALEMILQA Sbjct: 245 DYQGARLSLNFQNIEVRTALQVLADFTGLNIIASDAVTGQLSLRLKDVPWEQALEMILQA 304 Query: 301 RGLALQRSGGVLWIAPREEMAARERQELEQKALLADLEPLHAETFQLNYQRADNLRRALG 360 RGLALQRSGGVLWIAPREEMAARERQELEQKALLADLEPLHAETFQLNYQRADNLRRALG Sbjct: 305 RGLALQRSGGVLWIAPREEMAARERQELEQKALLADLEPLHAETFQLNYQRADNLRRALG 364 Query: 361 LGEDGTPQANRRASLLSRRGSAMIDSHTNQLLVTDTLAALANVRKLIERIDIAARQVMIE 420 LGEDGTPQANRRASLLSRRGSAMIDSHTNQLLVTDTLAALANVRKLIERIDIAARQVMIE Sbjct: 365 LGEDGTPQANRRASLLSRRGSAMIDSHTNQLLVTDTLAALANVRKLIERIDIAARQVMIE 424 Query: 421 ARIVEADDSFARNLGVKLGLAARTQGAALGNSYASVGELSGQTPPAAGTYLREPALGLGA 480 ARIVEADDSFARNLGVKLGLAARTQGAALGNSYASVGELSGQTPPAAGTYLREPALGLGA Sbjct: 425 ARIVEADDSFARNLGVKLGLAARTQGAALGNSYASVGELSGQTPPAAGTYLREPALGLGA 484 Query: 481 GALAGSAPGSFAFTLFNAAAQRFLNVELSALEAEGRGKIVSSPRLVTADQQAALIEQGEE 540 GALAGSAPGSFAFTLFNAAAQRFLNVELSALEAEGRGKIVSSPRLVTADQQAALIEQGEE Sbjct: 485 GALAGSAPGSFAFTLFNAAAQRFLNVELSALEAEGRGKIVSSPRLVTADQQAALIEQGEE 544 Query: 541 IPYQQSIGSGATATAFKKANLKLEVTPQITPDGNVILDVDVNKDSRGSATPGGLAINTKH 600 IPYQQSIGSGATATAFKKANLKLEVTPQITPDGNVILDVDVNKDSRGSATPGGLAINTKH Sbjct: 545 IPYQQSIGSGATATAFKKANLKLEVTPQITPDGNVILDVDVNKDSRGSATPGGLAINTKH 604 Query: 601 IKTKVQVEDGGTVVIGGIYTQTDNEHETRVPLLGEIPLLGALFRSRNKVRDKTELLIFLT 660 IKTKVQVEDGGTVVIGGIYTQTDNEHETRVPLLGEIPLLGALFRSRNKVRDKTELLIFLT Sbjct: 605 IKTKVQVEDGGTVVIGGIYTQTDNEHETRVPLLGEIPLLGALFRSRNKVRDKTELLIFLT 664 Query: 661 PRIVAPPRPY 670 PRIVAPPRPY Sbjct: 665 PRIVAPPRPY 674 >gi|300310140|ref|YP_003774232.1| type II/III HrcC transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 693 Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 133/298 (44%), Gaps = 46/298 (15%) Query: 385 DSHTNQLLVTDTLAALANVRKLIERIDIAARQVMIEARIVEADDSFARNLGVKLGLAART 444 DS N +++ D +A LI ++D+ +QV IEA IV+ D S +GV+ G A Sbjct: 307 DSSLNAIMIYDDIAKRDMYAALINQLDVKPQQVEIEALIVDIDRSRLAEMGVEWGARAGV 366 Query: 445 QGAALGNSYASVGELSGQTPPAAGTYLREPALGLGAGALAGSAPGSFAFTLFNAAAQRFL 504 + + SG P G TL + A RF Sbjct: 367 VNTT---VNGTTTQSSGTDLPLPGA------------------------TLLISDAARFY 399 Query: 505 NVELSALEAEGRGKIVSSPRLVTADQQAALIEQGEEIPYQQSIGSGATATAFKKANLKLE 564 L A+E+ G +++++P ++T D AA+++ + Y IG + A L Sbjct: 400 -ARLKAMESNGEARVLATPTVLTLDNVAAVLDLSQSA-YVSLIGERVADMSDITAGTMLR 457 Query: 565 VTPQITPDGN---VILDVDVNKDS-------------RGS-ATPGGLAINTKHIKTKVQV 607 V P+I DG V L+VD+ S RG+ A+ ++ I T+ + Sbjct: 458 VIPRIIDDGGQTRVRLEVDIEDGSLNNGNNDSGSNSSRGTGASTIAASVTRSTINTQAII 517 Query: 608 EDGGTVVIGGIYTQTDNEHETRVPLLGEIPLLGALFRSRNKVRDKTELLIFLTPRIVA 665 + T++IGG ++ ++ +VPLLG++P++G LFRS ++ E L +TPRI + Sbjct: 518 DAQQTLMIGGYRAESLIRNKQKVPLLGDLPVVGGLFRSESRSNSTRERLFLITPRITS 575 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,002,549 Number of extensions: 84317 Number of successful extensions: 323 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 320 Number of HSP's successfully gapped: 2 Length of query: 670 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 578 Effective length of database: 1,184,250 Effective search space: 684496500 Effective search space used: 684496500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)