BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0188.p
         (306 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313466|ref|YP_003777558.1| hypothetical protein Hsero_4180...   520   e-149

>gi|300313466|ref|YP_003777558.1| hypothetical protein Hsero_4180
           [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score =  520 bits (1338), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 302/306 (98%), Positives = 302/306 (98%), Gaps = 2/306 (0%)

Query: 1   MTWTPLRCLRPRLCIGLDLAPQRLRLALARRRGRQREVLRLAQAALPDGLLQDGQITDLD 60
           MTWTPLRCLRPRLCIGLDLAPQRLRLALARRRGRQREVLRLAQAALPDGLLQDGQITDLD
Sbjct: 73  MTWTPLRCLRPRLCIGLDLAPQRLRLALARRRGRQREVLRLAQAALPDGLLQDGQITDLD 132

Query: 61  AVVQACRPLLDPACPAQAALVLGMPRTCLSVQRLVLPAGSSDWERLAQVRAEMSAYGLAP 120
           AVVQACRPLLDPACPAQAALVLGMPRTCLSVQRLVLPAGSSDWERLAQVRAEMSAYGLAP
Sbjct: 133 AVVQACRPLLDPACPAQAALVLGMPRTCLSVQRLVLPAGSSDWERLAQVRAEMSAYGLAP 192

Query: 121 ADHVMDYRVAPARAGQDVSLWAWAASSLAVEDRLALAAALHRPLILAALPPEDECLGDFL 180
           ADHVMDYRVAPARAGQDVSLWAWAASSLAVEDRLALAAALHRP  LAALPPEDECLGDFL
Sbjct: 193 ADHVMDYRVAPARAGQDVSLWAWAASSLAVEDRLALAAALHRP--LAALPPEDECLGDFL 250

Query: 181 RPAASAAHDALLHLDPDDSWLIYGDTPAQGLRWSPAVAGPTALLAELAPLLRPKPQRLLL 240
           RPAASAAHDALLHLDPDDSWLIYGDTPAQGLRW PAVAGPTALLAELAPLLRPKPQRLLL
Sbjct: 251 RPAASAAHDALLHLDPDDSWLIYGDTPAQGLRWRPAVAGPTALLAELAPLLRPKPQRLLL 310

Query: 241 DCHPAALPTHDALPMLRAAFARYAGLRALPAPLPADLILAPSARLPGANPAGSFHLAIAL 300
           DCHPAALPTHDALPMLRAAFARYAGLRALPAPLPADLILAPSARLPGANP GSFHLAIAL
Sbjct: 311 DCHPAALPTHDALPMLRAAFARYAGLRALPAPLPADLILAPSARLPGANPVGSFHLAIAL 370

Query: 301 AWRGLA 306
           AWRGLA
Sbjct: 371 AWRGLA 376


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 697,309
Number of extensions: 20722
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,217,395
Effective search space: 269044295
Effective search space used: 269044295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)