BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0185.p
         (403 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313464|ref|YP_003777556.1| beta-lactamase class C protein ...   827   0.0  
gi|300312335|ref|YP_003776427.1| beta-lactamase class C protein ...   113   3e-26

>gi|300313464|ref|YP_003777556.1| beta-lactamase class C protein
           [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/403 (100%), Positives = 403/403 (100%)

Query: 1   MPHARTTTLLTRSAAALLVLLAGAEIGRRIADLPSLPALVDLQFDITPRSQSYKVFEANR 60
           MPHARTTTLLTRSAAALLVLLAGAEIGRRIADLPSLPALVDLQFDITPRSQSYKVFEANR
Sbjct: 1   MPHARTTTLLTRSAAALLVLLAGAEIGRRIADLPSLPALVDLQFDITPRSQSYKVFEANR 60

Query: 61  IARSTHPRPWPMALRALEISVPWKDGSQLPVIDFLKTTSAHAFVVIQDGKIVYERYIDGY 120
           IARSTHPRPWPMALRALEISVPWKDGSQLPVIDFLKTTSAHAFVVIQDGKIVYERYIDGY
Sbjct: 61  IARSTHPRPWPMALRALEISVPWKDGSQLPVIDFLKTTSAHAFVVIQDGKIVYERYIDGY 120

Query: 121 DANSRFTSFSVAKSFVSALTGVALQQGKIRSLDEPIGHYLNSDEIAPAYAGITIGQLLDM 180
           DANSRFTSFSVAKSFVSALTGVALQQGKIRSLDEPIGHYLNSDEIAPAYAGITIGQLLDM
Sbjct: 121 DANSRFTSFSVAKSFVSALTGVALQQGKIRSLDEPIGHYLNSDEIAPAYAGITIGQLLDM 180

Query: 181 RSGIDVDENYGGSLASPVVRMFVSTDLHRFIARRSGLRFAPGSRFEYRSVDTLVLSRVLA 240
           RSGIDVDENYGGSLASPVVRMFVSTDLHRFIARRSGLRFAPGSRFEYRSVDTLVLSRVLA
Sbjct: 181 RSGIDVDENYGGSLASPVVRMFVSTDLHRFIARRSGLRFAPGSRFEYRSVDTLVLSRVLA 240

Query: 241 HATGMRLSDFAQQVLWEPLGMEQDASWSVDSGQHGVEKAFCCLNTTARDFARLGLLYLDG 300
           HATGMRLSDFAQQVLWEPLGMEQDASWSVDSGQHGVEKAFCCLNTTARDFARLGLLYLDG
Sbjct: 241 HATGMRLSDFAQQVLWEPLGMEQDASWSVDSGQHGVEKAFCCLNTTARDFARLGLLYLDG 300

Query: 301 GRVGDQQVVSPSWAHEPRQPVNHGEVLDYRDGWWIPPGNADDRDFSAIGVFGQYIYVNPA 360
           GRVGDQQVVSPSWAHEPRQPVNHGEVLDYRDGWWIPPGNADDRDFSAIGVFGQYIYVNPA
Sbjct: 301 GRVGDQQVVSPSWAHEPRQPVNHGEVLDYRDGWWIPPGNADDRDFSAIGVFGQYIYVNPA 360

Query: 361 TRTVIVKLSDYGVEQDEVLTMLAMRSISHYVAGKNQGLFMNRP 403
           TRTVIVKLSDYGVEQDEVLTMLAMRSISHYVAGKNQGLFMNRP
Sbjct: 361 TRTVIVKLSDYGVEQDEVLTMLAMRSISHYVAGKNQGLFMNRP 403


>gi|300312335|ref|YP_003776427.1| beta-lactamase class C protein
           [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 154/328 (46%), Gaps = 32/328 (9%)

Query: 60  RIARSTHPRPWPMALRALEISVPWKDGSQLPVIDFLKTTSAHAFVVIQDGKIVYERYIDG 119
           R A +  P P P A     I   +++GS   + D++    A A VV++DG+IV +R+  G
Sbjct: 64  RQAPAAQPVPLPAADPETTIHYRYRNGS-WTLDDYMAHQRATAVVVVKDGRIVAQRFNYG 122

Query: 120 YDANSRFTSFSVAKSFVSALTGVALQQGKIRSLDEPIGHYLNSDEIAPAYAGITIGQ--- 176
                R  S S+AK+ V+     AL+ GKI SLD+      ++++  PA  G   G+   
Sbjct: 123 RTPQMRMLSNSMAKTVVALGILKALELGKIASLDD------HAEDYVPALKGTLYGRTQL 176

Query: 177 --LLDMRSGIDVDENYGGSLASPVVRMFVSTDLHRFIARRSGLRFAP-GSRFEYRSVDTL 233
             LL M SG    E+Y  +    +    +  +      +    R AP G RF Y    T 
Sbjct: 177 VNLLRMASGARFTEDYTSNDDRAIFVRKLRREGTLAAVQSISERAAPEGERFNYAGAQTS 236

Query: 234 VLSRVLAHATGMRLSDFAQQVLWEPLGMEQDASWSVDS-GQHGVEKAFCCLNTTARDFAR 292
           VL  VL  ATG  +  +  + +W+P+G   +A+W ++   Q  + +     N T  D+AR
Sbjct: 237 VLGLVLQAATGQDMCQWIGEQIWQPMGAAAEATWLLNPVDQQALAQG--GFNATVYDYAR 294

Query: 293 LGLLYLDGGRVGDQQVVSP----SWAHEPRQPV---------NHGEV-LDYRDGWWIPPG 338
           LG+L  + G    QQV++     +     RQP          +HG     Y    WI PG
Sbjct: 295 LGMLLANDGVANGQQVIAREHVLAMTDPARQPPAFRPGVMLDSHGRTYFGYGYQVWIMPG 354

Query: 339 NADDRDFSAIGVFGQYIYVNPATRTVIV 366
           +   R F+ +G++GQ ++V+P  + V+V
Sbjct: 355 S--HRRFALLGIYGQAVFVDPELKLVMV 380


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,285,494
Number of extensions: 57058
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 2
Length of query: 403
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 316
Effective length of database: 1,207,925
Effective search space: 381704300
Effective search space used: 381704300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)