BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0183.p
         (253 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176...   516   e-148
gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide prot...   170   1e-43

>gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score =  516 bits (1330), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 250/253 (98%), Positives = 251/253 (99%)

Query: 1   MNRFSLASLPALALAALNACAPAWATDGPHPVDKRAYNLPPSAELNYSIQAKQSGLDVKG 60
           MNRFS ASLPALALAAL ACAPAWATDGPHPVDKRAYNLPPSAELNYSIQAKQSGLDVKG
Sbjct: 1   MNRFSPASLPALALAALTACAPAWATDGPHPVDKRAYNLPPSAELNYSIQAKQSGLDVKG 60

Query: 61  QGLVKWTQTKTSYSVTSETRAMLLGKILEATSEGAVDAYGLAPDRFVEKRLRREPSTTTF 120
           QGLVKWTQ+KTSYSVTSETRAMLLGKILEATSEGAVDAYGLAPDRFVEKRLRREPSTTTF
Sbjct: 61  QGLVKWTQSKTSYSVTSETRAMLLGKILEATSEGAVDAYGLAPDRFVEKRLRREPSTTTF 120

Query: 121 NREQNKITFTQSAESYPLQGGEQDRTSITWQFVAIARANAAKMKPGSEWNFFVAGQRDAE 180
           NREQNKITFTQSAESYPLQGGEQDRTSITWQFVAIARANAAKMKPGSEWNFFVAGQRDAE
Sbjct: 121 NREQNKITFTQSAESYPLQGGEQDRTSITWQFVAIARANAAKMKPGSEWNFFVAGQRDAE 180

Query: 181 QWTFKVVGREKIRTPQGETEALHLFRAPPPDDQGQKLDIWLAPKMEWYPVRLKFTDPDGD 240
           QWTFKVVGREKIRTPQGETEALHLFRAPPPDDQGQKLDIWLAPKMEWYPVRLKFTDPDGD
Sbjct: 181 QWTFKVVGREKIRTPQGETEALHLFRAPPPDDQGQKLDIWLAPKMEWYPVRLKFTDPDGD 240

Query: 241 YIEQTLDSLKKTN 253
           YIEQTLDSLKKTN
Sbjct: 241 YIEQTLDSLKKTN 253


>gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  170 bits (430), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 125/216 (57%), Gaps = 3/216 (1%)

Query: 38  NLPPSAELNYSIQAKQSGLDVKGQGLVKWTQTKTSYSVTSETRAMLLGKILEATSEGAVD 97
           + PPSA L+Y +          G   + W  +   Y +  E  A+ +   L+ +SEG +D
Sbjct: 41  DAPPSAVLDYDVTGTIDQKPSYGSASLDWRNSGQHYRLEGEVTAIWV-TWLKFSSEGELD 99

Query: 98  AYGLAPDRFVEKRLRREPSTTTFNREQNKITFTQSAESYPLQGGEQDRTSITWQFVAIAR 157
           A+G++P  + EK+  R  + T FNR  + I+F+ S   YP +GGEQDR S+ WQ  AI R
Sbjct: 100 AWGVSPTLYTEKKKFRSATNTHFNRNGDSISFSASETRYPRRGGEQDRGSLIWQLAAIGR 159

Query: 158 ANAAKMKPGSEWNFFVAGQRDAEQWTFKVVGREKIRTPQGETEALHLFRAPPPDDQGQKL 217
            + A+ +PG+  + FVAG RD E W  +V+G E I+ P G  +  H+ R P P     ++
Sbjct: 160 GDPAQFQPGAVIDLFVAGVRDGEVWRMQVIGEEAIKLPIGTLQTWHVVRVPKPGAYEDRI 219

Query: 218 DIWLAPKMEWYPVRLKFTD--PDGDYIEQTLDSLKK 251
           DIWLAP+ EWYP RL++TD  P+GD  E +L  L++
Sbjct: 220 DIWLAPQHEWYPARLRYTDPRPNGDVTELSLSELRR 255


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 772,269
Number of extensions: 31135
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 253
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,226,865
Effective search space: 208567050
Effective search space used: 208567050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)