BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0182.p
         (371 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide prot...   513   e-146
gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176...   169   4e-43

>gi|300313461|ref|YP_003777553.1| prolin-rich signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  513 bits (1320), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 252/255 (98%), Positives = 253/255 (99%)

Query: 117 MPAAPGAAGEASAAGEAARASAADKSEPVPADTTGKQYRTDAPPSAVLDYDVTGTIDQKA 176
           MPAAPGAAGEASAAGEAARASAADKSEPV ADTTGKQYRTDAPPSAVLDYDVTGTIDQK 
Sbjct: 1   MPAAPGAAGEASAAGEAARASAADKSEPVLADTTGKQYRTDAPPSAVLDYDVTGTIDQKP 60

Query: 177 SYGSASLDWRNSGQHYRLEGEVSAIWVTWLKFSSEGELDAWGVSPTLYTEKKKFRSATNT 236
           SYGSASLDWRNSGQHYRLEGEV+AIWVTWLKFSSEGELDAWGVSPTLYTEKKKFRSATNT
Sbjct: 61  SYGSASLDWRNSGQHYRLEGEVTAIWVTWLKFSSEGELDAWGVSPTLYTEKKKFRSATNT 120

Query: 237 HFNRNGDSISFSASETRYPRRGGEQDRGSLIWQLAAIGRGDPAQFQPGAVIDLFVAGVRD 296
           HFNRNGDSISFSASETRYPRRGGEQDRGSLIWQLAAIGRGDPAQFQPGAVIDLFVAGVRD
Sbjct: 121 HFNRNGDSISFSASETRYPRRGGEQDRGSLIWQLAAIGRGDPAQFQPGAVIDLFVAGVRD 180

Query: 297 GEVWRMQVIGEEAIKLPIGTLQTWHVVRVPKPGAYEDRIDIWLAPQHEWYPARLRYTDPR 356
           GEVWRMQVIGEEAIKLPIGTLQTWHVVRVPKPGAYEDRIDIWLAPQHEWYPARLRYTDPR
Sbjct: 181 GEVWRMQVIGEEAIKLPIGTLQTWHVVRVPKPGAYEDRIDIWLAPQHEWYPARLRYTDPR 240

Query: 357 PNGDVTELSLSELRR 371
           PNGDVTELSLSELRR
Sbjct: 241 PNGDVTELSLSELRR 255


>gi|300313462|ref|YP_003777554.1| hypothetical protein Hsero_4176
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score =  169 bits (427), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 3/216 (1%)

Query: 157 DAPPSAVLDYDVTGTIDQKASYGSASLDWRNSGQHYRLEGEVSAIWV-TWLKFSSEGELD 215
           + PPSA L+Y +          G   + W  S   Y +  E  A+ +   L+ +SEG +D
Sbjct: 38  NLPPSAELNYSIQAKQSGLDVKGQGLVKWTQSKTSYSVTSETRAMLLGKILEATSEGAVD 97

Query: 216 AWGVSPTLYTEKKKFRSATNTHFNRNGDSISFSASETRYPRRGGEQDRGSLIWQLAAIGR 275
           A+G++P  + EK+  R  + T FNR  + I+F+ S   YP +GGEQDR S+ WQ  AI R
Sbjct: 98  AYGLAPDRFVEKRLRREPSTTTFNREQNKITFTQSAESYPLQGGEQDRTSITWQFVAIAR 157

Query: 276 GDPAQFQPGAVIDLFVAGVRDGEVWRMQVIGEEAIKLPIGTLQTWHVVRVPKPGAYEDRI 335
            + A+ +PG+  + FVAG RD E W  +V+G E I+ P G  +  H+ R P P     ++
Sbjct: 158 ANAAKMKPGSEWNFFVAGQRDAEQWTFKVVGREKIRTPQGETEALHLFRAPPPDDQGQKL 217

Query: 336 DIWLAPQHEWYPARLRYTDPRPNGDVTELSLSELRR 371
           DIWLAP+ EWYP RL++TD  P+GD  E +L  L++
Sbjct: 218 DIWLAPKMEWYPVRLKFTD--PDGDYIEQTLDSLKK 251


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,045,139
Number of extensions: 40587
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,207,925
Effective search space: 343050700
Effective search space used: 343050700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)