BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0153.p
         (307 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313434|ref|YP_003777526.1| cell division protein FtsX [Her...   608   e-175

>gi|300313434|ref|YP_003777526.1| cell division protein FtsX
           [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  608 bits (1569), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 305/307 (99%), Positives = 307/307 (100%)

Query: 1   MNWLRQHFAAIGDALRHLLRSPGNFLLNVLVVSIALALPFAGLSALENVRPISDQMSVEP 60
           MNWLRQHFAAIGDALRHLLRSPGNFLLNVLVVSIALALPFAGLSALENVRPISDQMSVEP
Sbjct: 1   MNWLRQHFAAIGDALRHLLRSPGNFLLNVLVVSIALALPFAGLSALENVRPISDQMSVEP 60

Query: 61  EISIFMKPDASREAAQALGKTISQVLKDSNTVGKVEFIPREKAFEALKSKTGLADVLNTL 120
           EISIFMKPDASREAAQALGKTISQVLKDSNTVGKVEFIPREKAF+ALKSKTGLADVLNTL
Sbjct: 61  EISIFMKPDASREAAQALGKTISQVLKDSNTVGKVEFIPREKAFDALKSKTGLADVLNTL 120

Query: 121 GSNPLPDSYVLRLPGFQNAMDAGRVDQIAQQLQKQAGVDTVQIDSEWVKRLAALLRILRL 180
           GSNPLPDSYVLRLPGFQNAMDAGRVDQIAQQLQKQAGVDTVQIDSEWVKRLAALLRILRL
Sbjct: 121 GSNPLPDSYVLRLPGFQNAMDAGRVDQIAQQLQKQAGVDTVQIDSEWVKRLAALLRILRL 180

Query: 181 VLLFLGITLGAVVVAVVFNTIRLQVMTQRDEIEVSRLFGATNSFIYRPFYYTGALLGVCA 240
           VLLFLGITLGAVVVAVVFNTIRLQVMTQRDEIEVSRLFGATNSFIYRPFYYTGALLGVCA
Sbjct: 181 VLLFLGITLGAVVVAVVFNTIRLQVMTQRDEIEVSRLFGATNSFIYRPFYYTGALLGVCA 240

Query: 241 GLVALGLVVAAQQPLNAAILDFAHLYASEFQLALPSPMAIGLLLAVSALLGLFGAMLSVR 300
           GLVALGLVVAAQQPLNAAILDFAHLYASEFQLALPSPMAIGLLLAVSALLGLFGAMLSVR
Sbjct: 241 GLVALGLVVAAQQPLNAAILDFAHLYASEFQLALPSPMAIGLLLAVSALLGLFGAMLSVR 300

Query: 301 RQLARGA 307
           RQ+ARGA
Sbjct: 301 RQMARGA 307


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 713,411
Number of extensions: 22968
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,217,395
Effective search space: 270261690
Effective search space used: 270261690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)