BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0151.p
         (320 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313432|ref|YP_003777524.1| signal recognition particle GTP...   503   e-144
gi|300309714|ref|YP_003773806.1| signal recognition particle sub...   124   1e-29
gi|300311343|ref|YP_003775435.1| flagellar biosynthesis GTP-bind...    55   8e-09

>gi|300313432|ref|YP_003777524.1| signal recognition particle GTPase
           involved in cell division protein [Herbaspirillum
           seropedicae SmR1]
          Length = 321

 Score =  503 bits (1296), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/251 (100%), Positives = 251/251 (100%)

Query: 70  EATQWLLDELKKKVKAERLTEAAQVRTALRTLLIELLQPLQRPLVLGRDKPLVMMIAGVN 129
           EATQWLLDELKKKVKAERLTEAAQVRTALRTLLIELLQPLQRPLVLGRDKPLVMMIAGVN
Sbjct: 71  EATQWLLDELKKKVKAERLTEAAQVRTALRTLLIELLQPLQRPLVLGRDKPLVMMIAGVN 130

Query: 130 GAGKTTTIGKLALHLQAHGQSVLLAAGDTFRAAAREQLAVWGERNNVQVIAQESGDPAAV 189
           GAGKTTTIGKLALHLQAHGQSVLLAAGDTFRAAAREQLAVWGERNNVQVIAQESGDPAAV
Sbjct: 131 GAGKTTTIGKLALHLQAHGQSVLLAAGDTFRAAAREQLAVWGERNNVQVIAQESGDPAAV 190

Query: 190 AYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIGKAMHSAPHEVLLVIDGNT 249
           AYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIGKAMHSAPHEVLLVIDGNT
Sbjct: 191 AYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIGKAMHSAPHEVLLVIDGNT 250

Query: 250 GQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEQIEDLQAF 309
           GQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEQIEDLQAF
Sbjct: 251 GQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEQIEDLQAF 310

Query: 310 NATEFVDALLS 320
           NATEFVDALLS
Sbjct: 311 NATEFVDALLS 321


>gi|300309714|ref|YP_003773806.1| signal recognition particle
           subunit SRP54 protein [Herbaspirillum seropedicae SmR1]
          Length = 456

 Score =  124 bits (310), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 129/231 (55%), Gaps = 12/231 (5%)

Query: 94  VRTALRTLLIELLQPLQRPLVLGRDKPLVMMIAGVNGAGKTTTIGKLALHL-QAHGQSVL 152
           V+  L +L+   L P    L      P ++++AG+ GAGKTTT+GKLA +L +   + VL
Sbjct: 78  VQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTTVGKLAKYLRETTKKKVL 137

Query: 153 LAAGDTFRAAAREQL-AVWGERNNVQVIAQESGDPAAVAYDSVHSAQARGTHVVMVDTAG 211
             + D +R AA  QL  V G+       +Q +  P  +A  ++  A+     V++VDTAG
Sbjct: 138 TVSADVYRPAAIGQLETVTGQAGADFFPSQATDKPVDIALAALDYAKKHHHEVLIVDTAG 197

Query: 212 RLPTQLHLMDELKKIKRVIGKAMHSA--PHEVLLVIDGNTGQNALAQVKAFDDALGLTGL 269
           RL     +MDE++        A+H+A  P E L V+D   GQ+A+   KAF DAL LTG+
Sbjct: 198 RLGIDQAMMDEIR--------AVHAAIKPIETLFVVDAMLGQDAINTAKAFSDALPLTGV 249

Query: 270 VVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEQIEDLQAFNATEFVDALLS 320
           V+TKLDG ++GG   ++      P+ F GV E+++ L+AF+ +   + +L 
Sbjct: 250 VLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILG 300


>gi|300311343|ref|YP_003775435.1| flagellar biosynthesis GTP-binding
           protein [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 14/198 (7%)

Query: 122 VMMIAGVNGAGKTTTIGKLALH-LQAHGQSVL-LAAGDTFRAAAREQLAVWGERNNVQVI 179
           V  + G  G GKTTT  KLA   +  HG   L L   D +R    EQL ++G+   V V 
Sbjct: 267 VFAMVGPTGVGKTTTTAKLAARCVMRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVH 326

Query: 180 AQESGDPAAVAYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIGKAMHSAPH 239
           + +      +A + +     +G H V++DTAG +  +  ++ E   +    G  +     
Sbjct: 327 SVKDETDLRIALEEL-----KGKHTVLIDTAG-VGQRDQMVAEQDAMLTGAGVDIKR--- 377

Query: 240 EVLLVIDGNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGV 299
             LL ++       L +V     + GL G ++TKLD  A  G +  +     + L+++  
Sbjct: 378 --LLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNVLDVVIRHKLNLHYVAN 435

Query: 300 GEQI-EDLQAFNATEFVD 316
           G+++ EDL   N     D
Sbjct: 436 GQRVPEDLHVANKLYLAD 453


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 858,088
Number of extensions: 35287
Number of successful extensions: 250
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 3
Length of query: 320
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,217,395
Effective search space: 286087825
Effective search space used: 286087825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)