BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0139.p (401 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 759 0.0 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 626 0.0 gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 271 6e-74 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 271 8e-74 gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [H... 225 5e-60 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/401 (97%), Positives = 396/401 (98%) Query: 1 MEALICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAG 60 MEALICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAG Sbjct: 1 MEALICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAG 60 Query: 61 EDNRNVARMSGLLAGLPTAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMT 120 EDNRNVARM+GLLAGLP AVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMT Sbjct: 61 EDNRNVARMAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMT 120 Query: 121 RAPFVMGKAESAFARSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFQINRADQ 180 RAPFVMGKAESAFARSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFQINRADQ Sbjct: 121 RAPFVMGKAESAFARSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFQINRADQ 180 Query: 181 DAFALRSQQRWAKAHAEGFFAGEIAPLMIPQKKGDPLIVSTDEHPRPDTTLATLSRLKGV 240 DAFALRSQQRWA A A GFFAGEIAPL IPQKKGDPL+V+TDEHPRPDTTLATL++LKGV Sbjct: 181 DAFALRSQQRWAAAQAAGFFAGEIAPLTIPQKKGDPLVVTTDEHPRPDTTLATLAKLKGV 240 Query: 241 VRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAP 300 VRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAP Sbjct: 241 VRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAP 300 Query: 301 AVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHPLGA 360 AVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHPLGA Sbjct: 301 AVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHPLGA 360 Query: 361 SGARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIERVA 401 SGARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIERVA Sbjct: 361 SGARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIERVA 401 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 626 bits (1615), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/399 (76%), Positives = 350/399 (87%), Gaps = 1/399 (0%) Query: 2 EALICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAGE 61 + ICDAIRTP GRYGGAL VRADDL A P+R+LMERNP VDW V+D++YGCANQAGE Sbjct: 3 DVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIYGCANQAGE 62 Query: 62 DNRNVARMSGLLAGLPTAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTR 121 DNRNVARMS LLAGLP VPGST+NRLCGS +DA+G AARAIKSGE QLMIAGGVESMTR Sbjct: 63 DNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESMTR 122 Query: 122 APFVMGKAESAFARSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFQINRADQD 181 APFVMGKA+SAF+R AAI DTTIGWRFVN LMK +YG+D+MPETAENVA DF+++RADQD Sbjct: 123 APFVMGKADSAFSRQAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRADQD 182 Query: 182 AFALRSQQRWAKAHAEGFFAGEIAPLMIPQKKGDPLIVSTDEHPRPDTTLATLSRLKGVV 241 FA+RSQ + A A A G A EI P++IPQKKGDP+ V+ DEHPR T++ L+RLKGVV Sbjct: 183 QFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPRA-TSMEALARLKGVV 241 Query: 242 RPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAPA 301 +PDG+VTAGNASGVNDGACALLLAS +A + Y+LKPRAR+LGMATAGVAPRIMG GPAPA Sbjct: 242 KPDGSVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMGPAPA 301 Query: 302 VRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHPLGAS 361 +KVLAQ+G+T+ QMDVIELNEAFA+QGLAV+R+LG+ DD A VNPNGGAIA+GHPLG S Sbjct: 302 SKKVLAQLGMTIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPLGMS 361 Query: 362 GARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIERV 400 GARLVTTA QLER+GGRYALCTMCIGVGQGIA+VIERV Sbjct: 362 GARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIERV 400 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 271 bits (694), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 163/402 (40%), Positives = 239/402 (59%), Gaps = 17/402 (4%) Query: 2 EALICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAGE 61 + +I A RT G++GGAL + A DL A I++L+ + G+ + +++ G AG Sbjct: 3 DVVIVAAQRTAIGKFGGALSKIAAADLGAQVIKALLAKT-GIKPEAISEVILGQVLTAGL 61 Query: 62 DNRNVARMSGLLAGLPTAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTR 121 +N AR S + +GLP VP V ++CGS L AV +AA+AI+ G+ Q++IAGG E+M+ Sbjct: 62 -GQNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENMSA 120 Query: 122 APFVMGKAESAFAR-SAAIFDTTIG---WRFVNPLMKAQYGIDSMPETAENVATDFQINR 177 +P V+ + F A + DT I W N QY M TAENVA F+I+R Sbjct: 121 SPHVLNNSRDGFRMGDAKLTDTMIVDGLWDVYN-----QY---HMGITAENVAKKFEISR 172 Query: 178 ADQDAFALRSQQRWAKAHAEGFFAGEIAPLMIPQKKGDPLIVSTDEHPRPDTTLATLSRL 237 +QDAFA SQ + A G F EI P+ I KK + ++ TDE + T +L+ L Sbjct: 173 EEQDAFAAASQNKAEAAQKAGKFKDEIVPIEIKGKK-ETVVFDTDEFVKHGVTAESLATL 231 Query: 238 KGVVRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFG 297 + GTVTAGNASG+NDGA A+++ S K A L A++ ++AG+ P IMG G Sbjct: 232 RPAFDKAGTVTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDPSIMGMG 291 Query: 298 PAPAVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHP 357 P PA + L + G T +D++E+NEAFAAQ +AV + +G D + +N NGGAIA+GHP Sbjct: 292 PVPASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGW--DTSKINVNGGAIALGHP 349 Query: 358 LGASGARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIER 399 +GASG R++ T ++++ R + L ++CIG G G+AL +ER Sbjct: 350 IGASGCRVLVTLLHEMVRRDAKKGLASLCIGGGMGVALAVER 391 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 271 bits (693), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 175/410 (42%), Positives = 229/410 (55%), Gaps = 29/410 (7%) Query: 2 EALICDAIRTPFGRYG-GALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAG 60 +A I A RTP G+ G R DDL I+S + + PG+D +ED + GC+ G Sbjct: 7 DAYIVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVGCSFPEG 66 Query: 61 EDNRNVARMSGLLAGLPTAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMT 120 N+AR + LLAGLP + G T+NR C S + A+ MAA I+ GE +MIA G ESM+ Sbjct: 67 AQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAGAESMS 126 Query: 121 RAPFVMGKAESAFARSAAIFDTTIGWR-FVNPLMKAQYGIDSMPETAENVATDFQINRAD 179 P +MG F +I F + + YG M TAE VA ++++R Sbjct: 127 MVP-MMG------------FHPSININAFKDENVGMAYG---MGLTAEKVAQQWKVSREA 170 Query: 180 QDAFALRSQQRWAKAHAEGFFAGEIAPLMIPQK-----KGDPLI----VSTDEHPRPDTT 230 QD F+L S Q+ A G FA E+ I ++ G+ + VS DE PR D+ Sbjct: 171 QDEFSLASHQKAIAAQEAGEFADEMTSFEIVERFPNLATGEIDVKTRTVSLDEGPRADSN 230 Query: 231 LATLSRLKGVVRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVA 290 LA L++LK V G+VTAGN+S +DGA AL++ S K + L P AR + A GV Sbjct: 231 LAALAKLKPVFAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRGVP 290 Query: 291 PRIMGFGPAPAVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGG 350 P IMG GP A+ L GLT Q+D IELNEAFAAQ LAV+ DLGL D + VNP GG Sbjct: 291 PEIMGIGPKEAIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGL--DPSKVNPMGG 348 Query: 351 AIAIGHPLGASGARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIERV 400 AIA+GHPLGA+GA T I+ L R +Y + TMC+G G G A + ERV Sbjct: 349 AIALGHPLGATGAIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFERV 398 >gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 225 bits (573), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 147/400 (36%), Positives = 224/400 (56%), Gaps = 13/400 (3%) Query: 4 LICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERN--PGVDWSRVEDILYGCANQAGE 61 +I A RT G + GAL + A L A I + ++R +++E + GC QAG Sbjct: 7 VIVSAARTAMGSFQGALADLPAPHLGAVAISAALQRAQLSAAQIAQIEQVWMGCVLQAGL 66 Query: 62 DNRNVARMSGLLAGLPTAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTR 121 + AR + L AGLP V +T+N++CGS++ AV + +I +G +++AGG+ESM+ Sbjct: 67 -GQAPARQAALRAGLPQTVACATLNKVCGSAMQAVMLGHDSILAGSASMVVAGGMESMSN 125 Query: 122 APFVMGKAESAFARSAAIFDTTIGWRFVNPLMKA---QYGIDSMPETAENVATDFQINRA 178 AP+++ KA + D + F++ L A QY M AE+ A++F RA Sbjct: 126 APYLLPKARRGYRLG---HDRLLDHMFLDGLEDAYSDQYRGRLMGTFAEDCASEFGFTRA 182 Query: 179 DQDAFALRSQQRWAKAHAEGFFAGEIAPLMIPQKKGDPLIVSTDEHPRPDTTLATLSRLK 238 QDAFA++S R +A + G F E+ P+ + KKG +++S DE P L ++ LK Sbjct: 183 QQDAFAVQSTLRARQAISGGGFDWEVVPVDVAGKKGS-VVISQDEGPMA-VNLERIATLK 240 Query: 239 GVVRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGP 298 DGTVTA N+S ++DGA ALLL AA L P AR+LG A+ AP P Sbjct: 241 PAFSVDGTVTAANSSSISDGAAALLLMRESAALKQGLTPLARILGHASYAGAPEKFPTAP 300 Query: 299 APAVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHPL 358 +RK+ A+ GL A D+ E+NEAFA +A R+L + D +N +GGA A+GHP+ Sbjct: 301 IGVLRKIFAKTGLDAASTDLFEINEAFAVVPMAASRELDI--DMEKINVHGGACALGHPI 358 Query: 359 GASGARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIE 398 GASGAR++ + + L+ G + + ++CIG G+ A+ +E Sbjct: 359 GASGARIIVSLLGALKARGLKTGIASLCIGGGEATAIALE 398 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,370,065 Number of extensions: 61842 Number of successful extensions: 233 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 219 Number of HSP's successfully gapped: 6 Length of query: 401 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 314 Effective length of database: 1,207,925 Effective search space: 379288450 Effective search space used: 379288450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)