BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0122.p (265 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC t... 516 e-148 gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 301 3e-83 gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC t... 296 8e-82 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 213 1e-56 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 207 9e-55 >gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 516 bits (1330), Expect = e-148, Method: Compositional matrix adjust. Identities = 260/263 (98%), Positives = 261/263 (99%) Query: 1 MTAATVMPHASAEPEVRATTAPVLLEVSALSARYGKVAALTDTALSLRAGQIVTVIGPNG 60 MTAATVMPHASAEPEVRATTAPVLLEVS LSARYGKVAALTDTALSLRAGQIVTVIGPNG Sbjct: 2 MTAATVMPHASAEPEVRATTAPVLLEVSGLSARYGKVAALTDTALSLRAGQIVTVIGPNG 61 Query: 61 AGKSTLLNAMMGALPSGAAASGRIAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVE 120 AGKSTLLNAMMGALPSGAAASGRIAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVE Sbjct: 62 AGKSTLLNAMMGALPSGAAASGRIAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVE 121 Query: 121 DNLLLGAYKRHRNGESGYLDQQDFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAK 180 DNLLLGAYKRHRNGESGYLDQQDFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAK Sbjct: 122 DNLLLGAYKRHRNGESGYLDQQDFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAK 181 Query: 181 PQVLMLDEPSLGLAPLITREILSIISQLRSTGVATLLVEQNARAALQVADYGHVLEMGEI 240 PQVLMLDEPSLGLAPLITREILSIISQLRSTGVATLLVEQNARAALQVADYG+VLEMGEI Sbjct: 182 PQVLMLDEPSLGLAPLITREILSIISQLRSTGVATLLVEQNARAALQVADYGYVLEMGEI 241 Query: 241 VCAGPAGVLAEDRRIVESYLGVG 263 VCAGPAGVLAED RIVESYLGVG Sbjct: 242 VCAGPAGVLAEDSRIVESYLGVG 264 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 301 bits (772), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 159/243 (65%), Positives = 188/243 (77%), Gaps = 5/243 (2%) Query: 24 LLEVSALSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALPSGAAASGR 83 +LEV LSA YGKV L LS+ G+IVTVIGPNGAGK+TLL+A+MG LPS G Sbjct: 5 VLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLPS----RGA 60 Query: 84 IAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGESGYLDQQD 143 +AF G EVEE VA G++LVPEKRELF M +EDNL+LGA++R+R G+ + + Sbjct: 61 MAFDGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATLE 120 Query: 144 FVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITREILS 203 VYTLFPRL+ERR Q AGTLSGGERQMLAVGRALMAKP++LMLDEPSLGLAPLI REI Sbjct: 121 EVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFR 180 Query: 204 IISQLRSTGVATLLVEQNARAALQVADYGHVLEMGEIVCAGPAGVLAEDRRIVESYLGV- 262 II++LR GV+ LLVEQNARAALQVADYG+VLE G I GPA LA DRR++E+YLG+ Sbjct: 181 IIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGLS 240 Query: 263 GRH 265 G+H Sbjct: 241 GKH 243 >gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 296 bits (759), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 148/242 (61%), Positives = 188/242 (77%), Gaps = 4/242 (1%) Query: 23 VLLEVSALSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALPSGAAASG 82 ++L+V+ L A YGKV AL D L L G I TVIGPNGAGKSTLLNA+MG LP A G Sbjct: 4 LVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLP----AQG 59 Query: 83 RIAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGESGYLDQQ 142 + +QG V + +E+RV G++LVPE+RELF+TM+VEDNLLLG ++R R ++ LDQ Sbjct: 60 TVRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQL 119 Query: 143 DFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITREIL 202 V+ LFPRLKERR Q AGTLSGGERQMLA+GRA+MAKPQ+LMLDEPSLGLAP I +EIL Sbjct: 120 ATVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEIL 179 Query: 203 SIISQLRSTGVATLLVEQNARAALQVADYGHVLEMGEIVCAGPAGVLAEDRRIVESYLGV 262 I+S+LR+ G++ LLVEQNARAALQ ADYG+VLE+G++ G + LA D +++++YLG Sbjct: 180 HIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGF 239 Query: 263 GR 264 G+ Sbjct: 240 GK 241 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 213 bits (543), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 113/242 (46%), Positives = 164/242 (67%), Gaps = 8/242 (3%) Query: 23 VLLEVSALSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALPSGAAASG 82 ++L+ + YG + AL +L++ G+IVT+IG NGAGK+TLL + G P A+SG Sbjct: 1 MMLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGR-PR--ASSG 57 Query: 83 RIAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNG-ESGYLDQ 141 R+ F+G+D++Q++ E + RGL++ PE R +F ++TV +NL +GA+ E G Sbjct: 58 RVIFEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGI--- 114 Query: 142 QDFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITREI 201 ++V+ LFPRLKER Q AGT+SGGE+QMLA+GRALM+KP++L+LDEP+LGLAPL+ +I Sbjct: 115 -EYVFGLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQI 173 Query: 202 LSIISQLRSTGVATLLVEQNARAALQVADYGHVLEMGEIVCAGPAGVLAEDRRIVESYLG 261 II +R +GV LVEQNA AL VAD G+VLE G +V + L + + ++YLG Sbjct: 174 FDIIRTIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 Query: 262 VG 263 G Sbjct: 234 HG 235 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 207 bits (526), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 115/238 (48%), Positives = 154/238 (64%), Gaps = 5/238 (2%) Query: 24 LLEVSALSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALPSGAAASGR 83 +L+V L+ YG + A+ +LSL G+I ++G NGAGKST L A+ G + A GR Sbjct: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVK---AQRGR 66 Query: 84 IAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGESGYLDQQD 143 + G+D+ QM V G+ V E R TT+TVE+NL LGAY R + G + Sbjct: 67 VLLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKD--KDGVARDLE 124 Query: 144 FVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITREILS 203 +VY+LFP LK R AG LSGGE+QMLA+GRALMAKP+VL+LDEPS+GLAPLI +EI Sbjct: 125 WVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFR 184 Query: 204 IISQLRSTGVATLLVEQNARAALQVADYGHVLEMGEIVCAGPAGVLAEDRRIVESYLG 261 I+ ++ TG+ LLVEQN R AL++A G+VLE G+IV L + ++VE+YLG Sbjct: 185 IVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 814,557 Number of extensions: 34010 Number of successful extensions: 571 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 385 Number of HSP's successfully gapped: 139 Length of query: 265 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 181 Effective length of database: 1,222,130 Effective search space: 221205530 Effective search space used: 221205530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)