BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0112.p
         (803 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313394|ref|YP_003777486.1| glucosidase [Herbaspirillum ser...  1650   0.0  

>gi|300313394|ref|YP_003777486.1| glucosidase [Herbaspirillum
           seropedicae SmR1]
          Length = 803

 Score = 1650 bits (4272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 796/803 (99%), Positives = 800/803 (99%)

Query: 1   MSMLHPPRFALQSSEGNHLCLKADTGAVIELFVLEEDIIRVLVLPEGKLQGPASWAVAPG 60
           MSMLHPPRFALQSSEGNHLCLKADTGAVIELFVLEEDIIRVLVLPEGKLQGPASWAVAPG
Sbjct: 1   MSMLHPPRFALQSSEGNHLCLKADTGAVIELFVLEEDIIRVLVLPEGKLQGPASWAVAPG 60

Query: 61  AEDVPLQGRDRRDLSGFALPSFALRTTPGQLQIETALIRLSIALEGGFCQWELRQEGQWQ 120
           AEDVPLQGRDRRDLSGFALPSFALRTTPGQLQIETALIRLSIALEGGFCQWELRQEGQWQ
Sbjct: 61  AEDVPLQGRDRRDLSGFALPSFALRTTPGQLQIETALIRLSIALEGGFCQWELRQEGQWQ 120

Query: 121 SVLADRPTQAYNFGYWDEQVYHYLRRQPDEMYFGLGERAGDMNRAGQSYEMRNIDAMGYS 180
           SVLADRPTQAYNFGYWDEQVYHYLRRQP+EMYFGLGERAGDMNRAGQSYEMRNIDAMGYS
Sbjct: 121 SVLADRPTQAYNFGYWDEQVYHYLRRQPEEMYFGLGERAGDMNRAGQSYEMRNIDAMGYS 180

Query: 181 ARNTDPLYKHIPFYITWLPKTGAGFGLFYDTLSDCRFDMGRELDNYHGHYRYFTAPHGDL 240
           ARNTDPLYKHIPFYITWLPKTGAGFGLFYDTLSDCRFDMGRELDNYHGHYRYFTAPHGDL
Sbjct: 181 ARNTDPLYKHIPFYITWLPKTGAGFGLFYDTLSDCRFDMGRELDNYHGHYRYFTAPHGDL 240

Query: 241 DYYFIASPGTPLAATRRFTWLTGRPAWMPKWGLGYSGSTMSYTDAPDAQVQMGQFIAKCR 300
           DYYFIASPGTPLAATRRFTWLTGRPAWMPKWGLGYSGSTMSYTDAPDAQVQMGQFIAKCR
Sbjct: 241 DYYFIASPGTPLAATRRFTWLTGRPAWMPKWGLGYSGSTMSYTDAPDAQVQMGQFIAKCR 300

Query: 301 EHDIICDSFHLSSGYTSIGPKRYVFHWNTEKFPDPHGFVRSYLDAGIHLCANIKPCLLRD 360
           EHDI+CDSFHLSSGYTSIGPKRYVFHWNTEKFPDPHGFVRSYLDA IHLCANIKPCLLRD
Sbjct: 301 EHDILCDSFHLSSGYTSIGPKRYVFHWNTEKFPDPHGFVRSYLDASIHLCANIKPCLLRD 360

Query: 361 HPQFEQARQAGLLICDSQGEPAWVQFWDEVGAYLDFTNPATLDWWRANVKQALLDYGVSA 420
           HPQFEQARQAGLLICDSQGEPAWVQFWDEVGAYLDFTNPATLDWWRANVKQALLDYGVSA
Sbjct: 361 HPQFEQARQAGLLICDSQGEPAWVQFWDEVGAYLDFTNPATLDWWRANVKQALLDYGVSA 420

Query: 421 TWNDNNEFEVWTGDAYAHGFGQQYPVRQAKVLQTMLMMQASRQAQLEAAPQRRPFLVSRS 480
           TWNDNNEFEVWTGDAYAHGFGQQYPVRQAKVLQTMLMMQASRQAQLEAAPQRRPFLVSRS
Sbjct: 421 TWNDNNEFEVWTGDAYAHGFGQQYPVRQAKVLQTMLMMQASRQAQLEAAPQRRPFLVSRS 480

Query: 481 GGAGMQRYVQTWSGDNYTSWETLRYNLKMGLGLALSGVSNIGHDIGGFSGPAPAPELLVR 540
           GGAGMQRYVQTWSGDNYTSWETLRYNLKMGLGLALSGVSNIGHDIGGFSGPAPAPELLVR
Sbjct: 481 GGAGMQRYVQTWSGDNYTSWETLRYNLKMGLGLALSGVSNIGHDIGGFSGPAPAPELLVR 540

Query: 541 WVAFGVFMPRFSIHSWNDDKTVNEPWMYPEVTAQIAALIKLRYRFIPYLYELLWQSTQDY 600
           WVAFGVFMPRFSIHSWNDDKTVNEPWMYPEVTAQIAALIKLRYRFIPYLYELLWQSTQDY
Sbjct: 541 WVAFGVFMPRFSIHSWNDDKTVNEPWMYPEVTAQIAALIKLRYRFIPYLYELLWQSTQDY 600

Query: 601 QPVLRPTFAEFPHDRRCLDECDDMMLGSAMLVAPVVEQGQTERRVYLPSGARWVSYWSGE 660
           QPVLRPTFAEFPHDRRCLDECDDMMLGSAMLVAPVVEQGQTERRVYLPSGARWVSYWSGE
Sbjct: 601 QPVLRPTFAEFPHDRRCLDECDDMMLGSAMLVAPVVEQGQTERRVYLPSGARWVSYWSGE 660

Query: 661 RYEGGQEISLPAPWDQPVMLLREGAVIPMNVAQQQFEVRADERAFLVVPCKEQGEASGAC 720
           RYEGGQEISLPAPWDQPVMLLREGAVIPMNVAQQQF+VRADERAFLVVP KEQGEASGAC
Sbjct: 661 RYEGGQEISLPAPWDQPVMLLREGAVIPMNVAQQQFDVRADERAFLVVPYKEQGEASGAC 720

Query: 721 VEDDGHSQAWRDGEQGRWQVRARSDAAAVTLEVGREGRLPVAAETIDIFLPASEQRPVQA 780
           VEDDGHSQAWRDGEQGRWQVRARSDAAAVTLEVGRE RLPVAAETIDIFLPASEQRPV+A
Sbjct: 721 VEDDGHSQAWRDGEQGRWQVRARSDAAAVTLEVGREDRLPVAAETIDIFLPASEQRPVRA 780

Query: 781 TQARIVSEQRSQGWRRLTLALST 803
           TQARIVSEQRSQGWRRLTLALST
Sbjct: 781 TQARIVSEQRSQGWRRLTLALST 803


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,909,871
Number of extensions: 135434
Number of successful extensions: 271
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 1
Length of query: 803
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 710
Effective length of database: 1,179,515
Effective search space: 837455650
Effective search space used: 837455650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)