BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0080.p
         (576 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313341|ref|YP_003777433.1| FAD-dependent D-lactate dehydro...  1181   0.0  
gi|300313121|ref|YP_003777213.1| glycolate oxidase (FAD-linked s...    60   5e-10

>gi|300313341|ref|YP_003777433.1| FAD-dependent D-lactate
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 587

 Score = 1181 bits (3055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/576 (99%), Positives = 574/576 (99%)

Query: 1   MDVISKLEAIVGSKHVLTGDAQTRRFRQGLRYGGGEVLAVVRPGRLLEMWRVLQVCHAAN 60
           MDVISKLEAIVGSKHVLTGDAQTRRFRQGLRYGGGEVLAVVRPGRLLEMWRVLQVCHAAN
Sbjct: 12  MDVISKLEAIVGSKHVLTGDAQTRRFRQGLRYGGGEVLAVVRPGRLLEMWRVLQVCHAAN 71

Query: 61  MVIICQAANTGLTGGSTPIAEGYDRPVVLINTMRLTRLELLDQGQQVLSQPGVTLDQLER 120
           MVIICQAANTGLTGGSTPIAEGYDRPVVLINTMRLTRLELLDQGQQVLSQPGVTLDQLER
Sbjct: 72  MVIICQAANTGLTGGSTPIAEGYDRPVVLINTMRLTRLELLDQGQQVLSQPGVTLDQLER 131

Query: 121 RLKPLGREPHSVIGSSCIGASITGGICNNSGGSLIQRGPAYTQYALFARIDEQGRLELVN 180
           RLKPLGREPHSVIGSSCIGASITGGICNNSGGSLIQRGPAYTQYALFARIDEQGRLELVN
Sbjct: 132 RLKPLGREPHSVIGSSCIGASITGGICNNSGGSLIQRGPAYTQYALFARIDEQGRLELVN 191

Query: 181 HLGIDLGEDPERILQQLDAGHIDPALVHHVPGQMASDREYADHVRDISSPVPARFNADPR 240
           HLGIDLGEDPERILQQLDAGHIDPALVHHVPGQMASDREYADHVRDISSPVPARFNADPR
Sbjct: 192 HLGIDLGEDPERILQQLDAGHIDPALVHHVPGQMASDREYADHVRDISSPVPARFNADPR 251

Query: 241 RLYEASGSAGKIAVFALRLDTFAADQVTQVFYIGANDPAVLEDLRRHILSNFRALPIAGE 300
           RLYEASGSAGKIAVFALRLDTFAADQVTQVFYIGANDPAVLEDLRRHILSNFRALPIAGE
Sbjct: 252 RLYEASGSAGKIAVFALRLDTFAADQVTQVFYIGANDPAVLEDLRRHILSNFRALPIAGE 311

Query: 301 YMHRSGYDLARKYGKDLFLYIRKAGTDKVPLAFALKSRFDALTEKLGLGRSLSDRLLQAL 360
           YMHRSGYDLARKYGKDLFLYIRKAGTDKVPLAFALKSRFDALTEKLGLGRSLSDRLLQAL
Sbjct: 312 YMHRSGYDLARKYGKDLFLYIRKAGTDKVPLAFALKSRFDALTEKLGLGRSLSDRLLQAL 371

Query: 361 ADRLPAHLPPRLEDMRDRYAHHLLLKMGDEGIEEARAYLHAILPTAQAGFIECDAEEASA 420
           ADRLPAHLPPRLEDMRDRYAHHLLLKMGDEGIEEARAYLHAILPTAQAGFIECDAEEA A
Sbjct: 372 ADRLPAHLPPRLEDMRDRYAHHLLLKMGDEGIEEARAYLHAILPTAQAGFIECDAEEAGA 431

Query: 421 AFLNRFAIGNAANRYRAVHQDTVEDIVALDVALPRNTYDWFEVLPTELAEEIEFTMYCGH 480
           AFLNRFAIGNAANRYRAVHQDTVEDIVALDVALPRNTYDWFEVLP ELAE+IEFTMYCGH
Sbjct: 432 AFLNRFAIGNAANRYRAVHQDTVEDIVALDVALPRNTYDWFEVLPKELAEQIEFTMYCGH 491

Query: 481 FFCHVMHQEYLVKKGRDCDAVKQRLLAMLEARGARYPAEHNFGHLYHAGPEVEQFYRRLD 540
           FFCHVMHQEYLVKKGRDCDAVKQRLLAMLEARGARYPAEHNFGHLYHAGPEVEQFYRRLD
Sbjct: 492 FFCHVMHQEYLVKKGRDCDAVKQRLLAMLEARGARYPAEHNFGHLYHAGPEVEQFYRRLD 551

Query: 541 PTNSFNPGIGLTSTRQHWGQSCCPAHAASEHSKTAC 576
           PTNSFNPGIGLTSTRQHWGQSCCPAHAASEHS+TAC
Sbjct: 552 PTNSFNPGIGLTSTRQHWGQSCCPAHAASEHSRTAC 587


>gi|300313121|ref|YP_003777213.1| glycolate oxidase (FAD-linked
           subunit) oxidoreductase [Herbaspirillum seropedicae
           SmR1]
          Length = 495

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 8/153 (5%)

Query: 2   DVISKLEAIVGSKHVLTGDAQTRRFR-QGLRYGGGEVLAVVRPGRLLEMWRVLQVCHAAN 60
           +V+  L  +V +  VL  +  TR +   GL       + VV P    ++  +++ CHA  
Sbjct: 16  EVVDALRRVVPAHCVLCDEEDTRPYECDGLAAYRQLPMVVVLPENEAQVVAIMKTCHALQ 75

Query: 61  MVIICQAANTGLTGGSTPIAEGYDRPVVLINTMRLTRLELLDQ-GQQVLSQPGVTLDQLE 119
           + I+ + A TGL+GG+TPIA+G     V+++T +  ++  +D+  +  + QPGV    + 
Sbjct: 76  VQIVPRGAGTGLSGGATPIADG-----VVVSTAKFNQILQMDKYSRTAVVQPGVRNLAIS 130

Query: 120 RRLKPLGREPHSVIGSSCIGASITGGICNNSGG 152
               P G   ++   SS I  SI G +  NSGG
Sbjct: 131 EAAAPHGLY-YAPDPSSQIACSIGGNVAENSGG 162


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,868,474
Number of extensions: 82214
Number of successful extensions: 254
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 2
Length of query: 576
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 486
Effective length of database: 1,193,720
Effective search space: 580147920
Effective search space used: 580147920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)