BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0079.p (236 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313340|ref|YP_003777432.1| transcription regulator protein... 477 e-136 gi|300312626|ref|YP_003776718.1| GntR family transcription regul... 78 6e-16 gi|300313520|ref|YP_003777612.1| transcription regulator protein... 75 4e-15 gi|300312368|ref|YP_003776460.1| GntR family transcription regul... 74 8e-15 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 74 2e-14 >gi|300313340|ref|YP_003777432.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 477 bits (1228), Expect = e-136, Method: Compositional matrix adjust. Identities = 236/236 (100%), Positives = 236/236 (100%) Query: 1 MTSKKTPPNLQLQQVRISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREA 60 MTSKKTPPNLQLQQVRISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREA Sbjct: 1 MTSKKTPPNLQLQQVRISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREA 60 Query: 61 TNALAGRGLIAVSSGKSPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVL 120 TNALAGRGLIAVSSGKSPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVL Sbjct: 61 TNALAGRGLIAVSSGKSPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVL 120 Query: 121 AAEHRTPADIDRLNAIVAQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPI 180 AAEHRTPADIDRLNAIVAQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPI Sbjct: 121 AAEHRTPADIDRLNAIVAQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPI 180 Query: 181 LFDSTRSVHSHTRNQQEWDSVLLNHQNIAAAIINGNASAARRLVDIHYVDAYKRYD 236 LFDSTRSVHSHTRNQQEWDSVLLNHQNIAAAIINGNASAARRLVDIHYVDAYKRYD Sbjct: 181 LFDSTRSVHSHTRNQQEWDSVLLNHQNIAAAIINGNASAARRLVDIHYVDAYKRYD 236 >gi|300312626|ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 78.2 bits (191), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 107/228 (46%), Gaps = 20/228 (8%) Query: 16 RISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIAVSSG 75 R+ QI+D + + I E + G LPSE +L GVSRP++REA AL G I V G Sbjct: 10 RLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIEVRMG 69 Query: 76 KSPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPADIDRLNA 135 V P P + L++++ P++++ R ++ + A AA+H + I + Sbjct: 70 SGIYVCP----PVQRERRIDLSSEE-GPLELIRAREMIEGEVAYAAAQHGSKQQIAAVEE 124 Query: 136 IVAQMPAALGNVEA-FSPLDA--AFHEAVGQATQNPLLSAIISGISPILFDST-----RS 187 A M + N +A PL+A FH + +AT N +L +++ LFD+ + Sbjct: 125 AYALM---ISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQ----LFDARLGPLFKR 177 Query: 188 VHSHTRNQQEWDSVLLNHQNIAAAIINGNASAARRLVDIHYVDAYKRY 235 +HSH + W + H + A+ N AR + H A+ RY Sbjct: 178 LHSHFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDIAFTRY 225 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 75.1 bits (183), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 2/219 (0%) Query: 17 ISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIAVSSGK 76 +SD +A ++ I G LP+E L + FGVSR VREA L G++ G Sbjct: 10 LSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGS 69 Query: 77 SPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPADIDRLNAI 136 V + + + +++ + +QI+E+R +++ + A AA+ R+ D+ + A Sbjct: 70 GVFVTEQAGIKPLRIDYTEVSSPEAV-LQIVELRRAIEAEVAAQAAKRRSAEDLQAIEAA 128 Query: 137 VAQMPAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPILFDSTRSVHSHTRNQQ 196 +AQ+ + D AFH A+ QAT+NP + +S L +T + + Sbjct: 129 LAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVTRGNEARYE 188 Query: 197 EWD-SVLLNHQNIAAAIINGNASAARRLVDIHYVDAYKR 234 ++ V H+ I AI G+ AAR H +A +R Sbjct: 189 DFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARR 227 >gi|300312368|ref|YP_003776460.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 74.3 bits (181), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 97/207 (46%), Gaps = 13/207 (6%) Query: 14 QVRISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIAVS 73 +V ++D + + R I + P LPSE ELT F VSR +REA + L GL+ Sbjct: 27 KVTLADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVGSR 86 Query: 74 SGKSPTVLPLS-KVPFS-NL-AQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPADI 130 G VLP + PF +L G + Q ++++E+R ++ + A LAA+ RT A Sbjct: 87 RGSGTVVLPANPATPFRLDLDVDDGRDSIQAV-LRVIELRRGVEGEMAALAAQRRTSAQ- 144 Query: 131 DRLNAIVAQMPAALGNVEAFS----PLDAAFHEAVGQATQNPLLSAIISGISPILFDSTR 186 N + Q A+ A P D AFH A+ A+ NPL ++++ +S L + R Sbjct: 145 ---NLAIQQALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIR 201 Query: 187 SVHSHTRNQQEW-DSVLLNHQNIAAAI 212 + E+ V H +A AI Sbjct: 202 VARMNEARSNEFVQQVRAEHAALAEAI 228 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 102/223 (45%), Gaps = 8/223 (3%) Query: 17 ISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIAVSSGK 76 +S ++ + I+ L PG LP+E E+ + GVSR VREA + L GL+ G Sbjct: 20 LSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVETRHGI 79 Query: 77 SPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPADIDRLNAI 136 VL K N+ + T + + +LE+R SL+ + A LAA RT + + Sbjct: 80 GTFVLEAKKGGNINIDPATITTMR-DLLALLELRISLETETAGLAAARRTEEQLQEIREA 138 Query: 137 VAQMPA-ALGNVEAFSPLDAAFHEAVGQATQNPLLSAIIS----GISPILFDSTRSVHSH 191 + A G + P D FH A+ AT N IIS G+ P +T + +H Sbjct: 139 LDLFRANQQGGGDTVGP-DFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINTAEL-AH 196 Query: 192 TRNQQEWDSVLLNHQNIAAAIINGNASAARRLVDIHYVDAYKR 234 + D V H++I AI G+A AAR + H ++ +R Sbjct: 197 DQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRER 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.130 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 679,310 Number of extensions: 26347 Number of successful extensions: 162 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 11 Length of query: 236 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 154 Effective length of database: 1,231,600 Effective search space: 189666400 Effective search space used: 189666400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)