BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0067.p
         (355 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313311|ref|YP_003777403.1| sugar ABC transporter periplasm...   716   0.0  

>gi|300313311|ref|YP_003777403.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 369

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/355 (100%), Positives = 355/355 (100%)

Query: 1   MNAFVRRRGVGLQLAAIAASTIPLMLAAGSASAQVATGDTSQAKIALSNNYAANAWRQSM 60
           MNAFVRRRGVGLQLAAIAASTIPLMLAAGSASAQVATGDTSQAKIALSNNYAANAWRQSM
Sbjct: 15  MNAFVRRRGVGLQLAAIAASTIPLMLAAGSASAQVATGDTSQAKIALSNNYAANAWRQSM 74

Query: 61  LKTWAATADDAVKRKLVAAAPAFTTSENQPTEQAQQIQNLILQGYKAIVVDAASPTALNG 120
           LKTWAATADDAVKRKLVAAAPAFTTSENQPTEQAQQIQNLILQGYKAIVVDAASPTALNG
Sbjct: 75  LKTWAATADDAVKRKLVAAAPAFTTSENQPTEQAQQIQNLILQGYKAIVVDAASPTALNG 134

Query: 121 TIKKACAAGVVVVSYDGVVTEPCAYRVTFDFRKMGERQIDYLAERLNGKGNILEIRGLAG 180
           TIKKACAAGVVVVSYDGVVTEPCAYRVTFDFRKMGERQIDYLAERLNGKGNILEIRGLAG
Sbjct: 135 TIKKACAAGVVVVSYDGVVTEPCAYRVTFDFRKMGERQIDYLAERLNGKGNILEIRGLAG 194

Query: 181 VSVDGEIHAGIMDGLKKHPGLKVVGSVNGDWAQTVAQKAVAGILPTLPKIDGVVTQGGDG 240
           VSVDGEIHAGIMDGLKKHPGLKVVGSVNGDWAQTVAQKAVAGILPTLPKIDGVVTQGGDG
Sbjct: 195 VSVDGEIHAGIMDGLKKHPGLKVVGSVNGDWAQTVAQKAVAGILPTLPKIDGVVTQGGDG 254

Query: 241 FGVAQAFKAANRELPIIILGNREDELQWWKTQIPSGYKTYSASNPPGAVTVAFWVAQQVL 300
           FGVAQAFKAANRELPIIILGNREDELQWWKTQIPSGYKTYSASNPPGAVTVAFWVAQQVL
Sbjct: 255 FGVAQAFKAANRELPIIILGNREDELQWWKTQIPSGYKTYSASNPPGAVTVAFWVAQQVL 314

Query: 301 AGKKIPKDVDIVAPLLYLTAEQLPEALAKTPQGGVADIGFSQADTVKLLDAPKSK 355
           AGKKIPKDVDIVAPLLYLTAEQLPEALAKTPQGGVADIGFSQADTVKLLDAPKSK
Sbjct: 315 AGKKIPKDVDIVAPLLYLTAEQLPEALAKTPQGGVADIGFSQADTVKLLDAPKSK 369


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,133,259
Number of extensions: 48155
Number of successful extensions: 214
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 4
Length of query: 355
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,212,660
Effective search space: 326205540
Effective search space used: 326205540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)