BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0064.p (316 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313308|ref|YP_003777400.1| sugar ABC transporter permease ... 602 e-173 gi|300310064|ref|YP_003774156.1| sugar ABC transporter permease ... 86 5e-18 gi|300313727|ref|YP_003777819.1| sugar ABC transporter permease ... 84 2e-17 gi|300310397|ref|YP_003774489.1| ribose/xylose/arabinose/galacto... 84 2e-17 gi|300313726|ref|YP_003777818.1| sugar ABC transporter permease ... 80 2e-16 >gi|300313308|ref|YP_003777400.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 316 Score = 602 bits (1551), Expect = e-173, Method: Compositional matrix adjust. Identities = 316/316 (100%), Positives = 316/316 (100%) Query: 1 MSRLRSTLEQRPWVWSFLGAALLWLATLAVAGPDAAVNIGLSAFSFGALMVLVGLGQMLV 60 MSRLRSTLEQRPWVWSFLGAALLWLATLAVAGPDAAVNIGLSAFSFGALMVLVGLGQMLV Sbjct: 1 MSRLRSTLEQRPWVWSFLGAALLWLATLAVAGPDAAVNIGLSAFSFGALMVLVGLGQMLV 60 Query: 61 VTTGPGNIDLSIPSTIALAGALGLRTMGGEDGGILLGLVVTLGVGVGIGLANYLLIRLLQ 120 VTTGPGNIDLSIPSTIALAGALGLRTMGGEDGGILLGLVVTLGVGVGIGLANYLLIRLLQ Sbjct: 61 VTTGPGNIDLSIPSTIALAGALGLRTMGGEDGGILLGLVVTLGVGVGIGLANYLLIRLLQ 120 Query: 121 IPPIIATMSSSFILQSLAIHVGQGLKITPPQLLASFATGWLLHVPQLAWLVLAVALGLAW 180 IPPIIATMSSSFILQSLAIHVGQGLKITPPQLLASFATGWLLHVPQLAWLVLAVALGLAW Sbjct: 121 IPPIIATMSSSFILQSLAIHVGQGLKITPPQLLASFATGWLLHVPQLAWLVLAVALGLAW 180 Query: 181 ILGRTLFGRFLSAVGQNARAAWLAGIGVERIRCLCYVLCAVFAALCALLIAGFSGGASLD 240 ILGRTLFGRFLSAVGQNARAAWLAGIGVERIRCLCYVLCAVFAALCALLIAGFSGGASLD Sbjct: 181 ILGRTLFGRFLSAVGQNARAAWLAGIGVERIRCLCYVLCAVFAALCALLIAGFSGGASLD 240 Query: 241 MGNEYLLMSVAVVVIGGTSVTGGRPSVAGIWGAALFLYFTNTLLNVVGLSAGERSVLSGL 300 MGNEYLLMSVAVVVIGGTSVTGGRPSVAGIWGAALFLYFTNTLLNVVGLSAGERSVLSGL Sbjct: 241 MGNEYLLMSVAVVVIGGTSVTGGRPSVAGIWGAALFLYFTNTLLNVVGLSAGERSVLSGL 300 Query: 301 IIIAVIVCSGRRRQYR 316 IIIAVIVCSGRRRQYR Sbjct: 301 IIIAVIVCSGRRRQYR 316 >gi|300310064|ref|YP_003774156.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 344 Score = 85.5 bits (210), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 135/253 (53%), Gaps = 11/253 (4%) Query: 68 IDLSIPSTIALAGALGLR-TMGGEDGGILLGLVVTLGVGVGIGLANYLLIRLLQIPPIIA 126 IDLS+ S +A++ LG++ ++G G + + + G+ +G+ N ++ LL I + Sbjct: 92 IDLSVGSVLAVSAVLGMQVSLGAAPGWAIPMFIFS---GLVMGMVNGAMVALLNINAFVV 148 Query: 127 TMSSSFILQSLAIHVGQGLKITPPQLLASFA---TGWLLHVPQLAWLVLAVALGLAW-IL 182 T+ + + A + G + + SF G LHVP L W+ +AV L L+W IL Sbjct: 149 TLGTMTAFRGAAYLLADGTTVLNNDI-PSFEWIGNGDFLHVPWLIWVAVAVVL-LSWVIL 206 Query: 183 GRTLFGRFLSAVGQNARAAWLAGIGVERIRCLCYVLCAVFAALCALLIAGFSGGASLDMG 242 +T+ G + A+G N +AA L GI V + Y + +F+ L + A GA+ + G Sbjct: 207 RKTVLGMHIYAIGGNLQAARLTGIRVGLVLLFVYSISGLFSGLAGAMSASRLYGANGNWG 266 Query: 243 NEYLLMSVAVVVIGGTSVTGGRPSVAGIWGAALFLYFTNTLLNVVGLSAGERSVLSG-LI 301 + Y L ++A VV+GGTS+ GG S+ G AL + N L ++GLS+ + V G +I Sbjct: 267 SGYELDAIAAVVLGGTSLMGGVGSIWGTVVGALIIGVMNNGLTILGLSSFWQYVAKGAVI 326 Query: 302 IIAVIVCSGRRRQ 314 ++AVI+ R++ Sbjct: 327 VLAVILDKWRQKD 339 >gi|300313727|ref|YP_003777819.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 352 Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/274 (31%), Positives = 134/274 (48%), Gaps = 8/274 (2%) Query: 48 ALMVLVGLGQMLVVTTGPGNIDLSIPSTIALAGALGLRTMGGEDGGILLGLVVTLGVGVG 107 A+ +++ L QMLV+ T IDLS+ S +AL+G + + + +G+ + + V +G Sbjct: 63 AITIMLALAQMLVILTR--GIDLSVASNLALSGMMS-ALLAMHFPALPVGVFILMAVLIG 119 Query: 108 I--GLANYLLIRLLQIPPIIATMSSSFILQSLAIHVGQGLKITPPQLLASFATGWLLHVP 165 + GL N LI L++PPI+ T+ S + + + + G ++ + A F L + Sbjct: 120 LMLGLLNGWLIGYLELPPIVVTLGSMSVYRGMVFVLSGGAWVSSRNMPADFIAFPLARLG 179 Query: 166 QLAWLVL--AVALGLAWILGR-TLFGRFLSAVGQNARAAWLAGIGVERIRCLCYVLCAVF 222 L LV A+A+ W L R T FGR L A+G + AA GI Y L Sbjct: 180 GLTHLVWLGALAVVAIWFLARHTRFGRDLYAIGNDPAAAAYVGIASRGRLLWTYGLSGAM 239 Query: 223 AALCALLIAGFSGGASLDMGNEYLLMSVAVVVIGGTSVTGGRPSVAGIWGAALFLYFTNT 282 A L L A ++ + L +A VIGG S+ GG V+G ALFL N Sbjct: 240 AGLAGYLWVARYAVAYTEIAYGFELTVIAACVIGGVSIAGGVGQVSGAVLGALFLSVINN 299 Query: 283 LLNVVGLSAGERSVLSGLIIIAVIVCSGRRRQYR 316 L ++ +S +S L+GL+I+ +V + R +Q R Sbjct: 300 ALPIMRISPFWQSALTGLVILCAVVLNARGKQGR 333 >gi|300310397|ref|YP_003774489.1| ribose/xylose/arabinose/galactoside ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 328 Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/267 (30%), Positives = 139/267 (52%), Gaps = 8/267 (2%) Query: 52 LVGLGQMLVVTTGPGNIDLSIPSTIALAGALGLRTMGGEDGGILLGLVVTLGVGVGIGLA 111 ++ +G V+ TG IDLS+ + +ALAG + + L L+ +G+ IGL Sbjct: 68 ILAVGMSFVILTG--GIDLSVGAAMALAGTISAGLIVNSGLPAPLALLCGVGLATCIGLL 125 Query: 112 NYLLIRLLQIPPIIATMSSSFILQSLAIHVGQGLKITP-PQLLASFATGWLLHVPQLAWL 170 N L+ ++P II T+++ + + + + G I+ P ++ F G + VP L Sbjct: 126 NGALVAWGRMPAIIVTLATMGVARGVGLIYSGGYPISGLPGWISWFGVGRIGMVPVPVIL 185 Query: 171 VLAVALGLAWIL-GRTLFGRFLSAVGQNARAAWLAGIGVERIRCLCYVLCAVFAALCALL 229 +L V LAW+L RT FGR + A+G N AA L+G+ RI+ Y + + L A++ Sbjct: 186 MLIV-YALAWLLLQRTAFGRHVYAIGGNEMAARLSGVKTTRIKLAVYAISGFTSGLAAII 244 Query: 230 IAGFSGGASLDMGNEYLLMSVAVVVIGGTSVTGGRPSVAGIWGAALFLYFTNTLLNVVGL 289 + G + G + L ++A VV+GGT++ GGR V G A+ L N LN++G+ Sbjct: 245 LTGRLMSGQPNAGVGFELDAIAAVVLGGTAIAGGRGLVVGTLIGAVLLGILNNGLNLMGI 304 Query: 290 SAGERSVLSGLIIIAVIVCSGRRRQYR 316 + + ++ G+II+ I + R++R Sbjct: 305 NPYLQDIIRGVIILLAIYIA---REWR 328 >gi|300313726|ref|YP_003777818.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 342 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 14/239 (5%) Query: 38 NIGLSAFSFGALMVLVGLGQMLVVTTGPGNIDLSIPSTIALAG-ALGLRTMGGEDG-GIL 95 N+ S F+F ++ +L++ ID+S+ + IALA A+GL G G+L Sbjct: 62 NLADSTFNFSEKAMIALPMALLIICR---EIDISVSAIIALASVAMGLANQAGVPPLGLL 118 Query: 96 LGLVVTLGVGVGIGLANYLLIRLLQIPPIIATMSSSFILQSLA-IHVGQGLKITPPQLLA 154 L V + G GL N L+ L +P I+ T+ S + + LA + +G P++L Sbjct: 119 L---VAIATGTACGLLNGALVTRLGLPSIVVTIGSMSLFRGLASVVLGDQAFTQYPEVLG 175 Query: 155 SFATGWLLHV---PQLAWLVLAVALGLAWILGRTLFGRFLSAVGQNARAAWLAGIGVERI 211 + G+ V P + WL+ AV A +L T +GR L A+G N AA +G+ V+R Sbjct: 176 DWGQGYFFDVLPRPFVVWLLAAVVF--AVLLHVTRWGRRLYAIGNNPVAARFSGVAVDRY 233 Query: 212 RCLCYVLCAVFAALCALLIAGFSGGASLDMGNEYLLMSVAVVVIGGTSVTGGRPSVAGI 270 R +VL A L A + G G ++ + L + VV++GG S+ GG S+ G+ Sbjct: 234 RLALFVLTGAMAGLAAFFLTGRIGSTRPNIAMGWELEIITVVILGGVSIAGGTGSIGGV 292 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.142 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 639,771 Number of extensions: 16711 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 18 Length of query: 316 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 231 Effective length of database: 1,217,395 Effective search space: 281218245 Effective search space used: 281218245 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)