BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0062.p (507 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis pro... 994 0.0 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 383 e-107 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 375 e-105 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 374 e-104 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 373 e-104 >gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 507 Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust. Identities = 505/507 (99%), Positives = 507/507 (100%) Query: 1 MKIGTRLGGSFMLVTLLTCALIVASTLTLTQIGRHWNDFSGTVLGKQDYATQGYIKLGDG 60 MKIGTRLGGSFMLVTLLTCALIVASTLTLTQIGRHWNDFSGTVLGKQDYATQGYIKLGDG Sbjct: 1 MKIGTRLGGSFMLVTLLTCALIVASTLTLTQIGRHWNDFSGTVLGKQDYATQGYIKLGDG 60 Query: 61 VQNFKNYVVRGKDYDRHFLADMDAIVRLMDQYRKLGVDNPKEEALLEKISNGERRYREAL 120 VQNFKNYVVRGKDYDRHFLADMDAIVRLM+QYRKLGVDNPKEEALLEKISNGERRYREAL Sbjct: 61 VQNFKNYVVRGKDYDRHFLADMDAIVRLMEQYRKLGVDNPKEEALLEKISNGERRYREAL 120 Query: 121 AKAQAMKAAGASPSEVDAAISGADKVLGAGFSGLLAIARENAGSTGEQISSAIGAGKSLS 180 AKAQAMKAAGASPSEVDAAISGADKVLGAGFSGLLAIARENAGSTGEQISSAIGAGKSLS Sbjct: 121 AKAQAMKAAGASPSEVDAAISGADKVLGAGFSGLLAIARENAGSTGEQISSAIGAGKSLS 180 Query: 181 LAVGALVVVLALVLAVLATRSITQPMREAVRIAKTVAAGDLGSRIVVTRKDETGELLQAL 240 LAVGALVV+LALVLAVLATRSITQPMREAVRIAKTVAAGDLGSRIVVTRKDETGELLQAL Sbjct: 181 LAVGALVVILALVLAVLATRSITQPMREAVRIAKTVAAGDLGSRIVVTRKDETGELLQAL 240 Query: 241 KEMNASLQKVVGGVREGSDTIVTASTQIAGGNLDLSARTEEQASSLEQTAAAMEEITSTV 300 KEMNASLQKVVGGVREGSDTIVTASTQIAGGNLDLSARTEEQASSLEQTAAAMEEITSTV Sbjct: 241 KEMNASLQKVVGGVREGSDTIVTASTQIAGGNLDLSARTEEQASSLEQTAAAMEEITSTV 300 Query: 301 RRNADHARQANAMAGSVSEVASRSGLVVSDVVGTMDEIQASAREIEEIISVIDGIAFQTN 360 RRNADHARQANAMAGSVSEVASRSGLVVSDVVGTMDEIQASAREIEEIISVIDGIAFQTN Sbjct: 301 RRNADHARQANAMAGSVSEVASRSGLVVSDVVGTMDEIQASAREIEEIISVIDGIAFQTN 360 Query: 361 ILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSATAAKEIKDLIGNSVEKIAAGSKLVQ 420 ILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSATAAKEIKDLIGNSVEKIAAGSKLVQ Sbjct: 361 ILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSATAAKEIKDLIGNSVEKIAAGSKLVQ 420 Query: 421 AAGATIEELVRSVRDVTQIMSEISAASGEQESGIEQVNQAIAQMDTVTQQNAALVEEAAA 480 AAGATIEELVRSVRDVTQIMSEISAASGEQESGIEQVNQAIAQMDTVTQQNAALVEEAAA Sbjct: 421 AAGATIEELVRSVRDVTQIMSEISAASGEQESGIEQVNQAIAQMDTVTQQNAALVEEAAA 480 Query: 481 ATEALKAQARRLAESVSVFRLGGGQMA 507 ATEALKAQARRLAESVSVFRLGGGQMA Sbjct: 481 ATEALKAQARRLAESVSVFRLGGGQMA 507 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust. Identities = 249/510 (48%), Positives = 337/510 (66%), Gaps = 11/510 (2%) Query: 1 MKIGTRLGGSFMLVTLLTCALIVASTLTLTQIGRHWNDFSGTVLGKQDYATQGYIKLG-D 59 +KIG RL F+ + +L ++ L IG +D + L K+ A Q + + + Sbjct: 4 LKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAIKEN 63 Query: 60 GVQNFKNYVVRGKD--YDRHFLADMDAIVRLMDQYRK---LGVDNPKEEALLEKISNGER 114 GV+ F V++ D + +F +DA + Q +K + + +E+ L +++ Sbjct: 64 GVRTFA--VMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLRA 121 Query: 115 RYREALAKAQAMKAAGASPSEVDAAISGADKVLGAGFSGLLAIA---RENAGSTGEQISS 171 YR +K AG + + K++ G+L A ++ T I+ Sbjct: 122 AYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAINR 181 Query: 172 AIGAGKSLSLAVGALVVVLALVLAVLATRSITQPMREAVRIAKTVAAGDLGSRIVVTRKD 231 +G+S+ LA+GA+ +VL LA L TRSIT+P+ +AV IA+TVAAGDL SRI + +D Sbjct: 182 DYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRD 241 Query: 232 ETGELLQALKEMNASLQKVVGGVREGSDTIVTASTQIAGGNLDLSARTEEQASSLEQTAA 291 ETG+LL ALK MN +L +VG VR G++TI TAS +IA GNLDLSARTE QA SLE+TA+ Sbjct: 242 ETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETAS 301 Query: 292 AMEEITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVGTMDEIQASAREIEEIISV 351 AME++TSTV++NAD+ARQAN +A S S+VA++ G VV VV TM I AS+++I +II V Sbjct: 302 AMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGV 361 Query: 352 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSATAAKEIKDLIGNSVEK 411 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LI +SVEK Sbjct: 362 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEK 421 Query: 412 IAAGSKLVQAAGATIEELVRSVRDVTQIMSEISAASGEQESGIEQVNQAIAQMDTVTQQN 471 + GS+LV AG T++E+V+SV VT ++ EI+ AS EQ GIEQVN AI +D TQQN Sbjct: 422 VDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQN 481 Query: 472 AALVEEAAAATEALKAQARRLAESVSVFRL 501 AALVE+AAAA +++ QA L ++VSVFRL Sbjct: 482 AALVEQAAAAARSMQDQAASLTDAVSVFRL 511 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 375 bits (963), Expect = e-105, Method: Compositional matrix adjust. Identities = 249/525 (47%), Positives = 339/525 (64%), Gaps = 30/525 (5%) Query: 1 MKIGTRLGGSFMLVTLLTCALIVASTLTLTQIG--RHWNDFSGTVLGKQDYATQGYIKLG 58 +KIGTRL F LV + L+ + ++G N + V + + I + Sbjct: 6 LKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANELNVHTYEVRAQLRAMAESLINIE 65 Query: 59 DGVQNFKNYVVRGKDYDRHFLADMDAIVRLMDQYRKLGVDNPKEEALLEKISNGERRY-- 116 G + F + H M +++ R L DN ++ L+++S+ E+R+ Sbjct: 66 TGQRGFSLSGIDASLEPYHL--GMTTFKTALEKTRTLTSDNTLQQQRLQELSDSEQRWLK 123 Query: 117 ----------------REALAKAQAMKAAGASPSEVDAAISGADKVLGAGFSGLLAIARE 160 RE +A A + AG S++D+ D L S LL E Sbjct: 124 SAIDPAIELRRAVREGREQMAAVVAFEQAGKGKSQMDSMRVLLDD-LDRTESALLGERAE 182 Query: 161 NAGSTGEQISSAIGAGKSLSLAVGALVVVLALVLAVLATRSITQPMREAVRIAKTVAAGD 220 A + S+ + G GA+ ++LA++LA +IT+P+ AV++A+ VA+GD Sbjct: 183 EAAALRSVTSTTLIGG-------GAIALMLAVLLAWWLANNITRPLALAVQLARRVASGD 235 Query: 221 LGSRIVVTRKDETGELLQALKEMNASLQKVVGGVREGSDTIVTASTQIAGGNLDLSARTE 280 L +RI V +DETG LL ALK+MN SL ++V GVR G++ I TAS++IA GNLDLS+RTE Sbjct: 236 LTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTE 295 Query: 281 EQASSLEQTAAAMEEITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVGTMDEIQA 340 +QASSLE+TA++MEE+TSTV++N +AR+AN MA + S++AS G VV+ VV TM+EI Sbjct: 296 QQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEIND 355 Query: 341 SAREIEEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSATAAKE 400 S+R+I +IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKE Sbjct: 356 SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKE 415 Query: 401 IKDLIGNSVEKIAAGSKLVQAAGATIEELVRSVRDVTQIMSEISAASGEQESGIEQVNQA 460 IK LI +SV K+ +GS LV AG T+ E+V SV+ VT +++EISAA EQ SGIEQV+QA Sbjct: 416 IKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQA 475 Query: 461 IAQMDTVTQQNAALVEEAAAATEALKAQARRLAESVSVFRLGGGQ 505 + QMD VTQQNAALVE+AAAA+++L+ QA+ LA++VSVFRL GQ Sbjct: 476 VGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQ 520 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust. Identities = 251/517 (48%), Positives = 335/517 (64%), Gaps = 25/517 (4%) Query: 1 MKIGTRLGGSFMLVTLLTCALIVAST--LTLTQIGRHWNDFSGTVLGKQDYATQGYIKLG 58 M IG RL F L+ LT ++I+A L + + + L + Y L Sbjct: 7 MNIGRRLTLGFALI--LTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTNLV 64 Query: 59 DGVQNFKNYVVRGKDYDR----HFLADMDAIVRLMDQYRKLG---VDNPKEEALLEKISN 111 G+ + + K D +F A++ A + +Y+K + P+E+AL +KI Sbjct: 65 AGI---RRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGE 121 Query: 112 GERRYREALAKAQAMKAAGASPSEVDAAISGADKVLGAGFSG-------LLAIARENAGS 164 + Y + + KAAG + A+ D+V + L+ R+ Sbjct: 122 LRKLYLSSRDEINKAKAAG----NTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDD 177 Query: 165 TGEQISSAIGAGKSLSLAVGALVVVLALVLAVLATRSITQPMREAVRIAKTVAAGDLGSR 224 T +I + ++L L + L+++L +V A T IT+P+ AV +++ VA GDL S Sbjct: 178 TAREIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSE 237 Query: 225 IVVTRKDETGELLQALKEMNASLQKVVGGVREGSDTIVTASTQIAGGNLDLSARTEEQAS 284 I VT +DETG+LLQ+LK+MN SL+ +V VR G+DTI TAS++IA GNLDLS+RTE+QAS Sbjct: 238 IAVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQAS 297 Query: 285 SLEQTAAAMEEITSTVRRNADHARQANAMAGSVSEVASRSGLVVSDVVGTMDEIQASARE 344 SL +TA+AMEE+ STVR+NAD+ARQA+ +A S S VA + G VVS VV TM I AS+R+ Sbjct: 298 SLAETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRK 357 Query: 345 IEEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSATAAKEIKDL 404 I +IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK+L Sbjct: 358 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKEL 417 Query: 405 IGNSVEKIAAGSKLVQAAGATIEELVRSVRDVTQIMSEISAASGEQESGIEQVNQAIAQM 464 I +SV K+ GS+LV+ AG T++E+V SVR VT I++EISAAS EQ GIEQ+N AI QM Sbjct: 418 INDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQM 477 Query: 465 DTVTQQNAALVEEAAAATEALKAQARRLAESVSVFRL 501 D VTQQNAALVEEAAAA +++ QA RL + VSVFRL Sbjct: 478 DQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 373 bits (957), Expect = e-104, Method: Compositional matrix adjust. Identities = 218/360 (60%), Positives = 277/360 (76%), Gaps = 7/360 (1%) Query: 152 SGLLAIARENAGSTGEQI----SSAIGAGK---SLSLAVGALVVVLALVLAVLATRSITQ 204 + LA+AR A S Q+ + A+ G ++LA V+ A++L L RSI + Sbjct: 160 NNYLALARAFADSQDAQLQAEGAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVK 219 Query: 205 PMREAVRIAKTVAAGDLGSRIVVTRKDETGELLQALKEMNASLQKVVGGVREGSDTIVTA 264 P+ EAVR+A+ VAAGDL +RI +DETG+L+QAL++MN +L ++V GVR G+++I TA Sbjct: 220 PLTEAVRVAENVAAGDLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTA 279 Query: 265 STQIAGGNLDLSARTEEQASSLEQTAAAMEEITSTVRRNADHARQANAMAGSVSEVASRS 324 S +IA GNLDLSARTE+QA SLE+TA+AMEE+TSTVR+NAD+ARQAN MA S SE+A + Sbjct: 280 SGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQG 339 Query: 325 GLVVSDVVGTMDEIQASAREIEEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 384 G +V VV TMDEI S+R+I +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 340 GQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 399 Query: 385 AEVRSLAQRSATAAKEIKDLIGNSVEKIAAGSKLVQAAGATIEELVRSVRDVTQIMSEIS 444 EVRSLAQRSA AAKEIK LI +SV K+ GS LV AGAT+E++V SVR VT I++EIS Sbjct: 400 TEVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEIS 459 Query: 445 AASGEQESGIEQVNQAIAQMDTVTQQNAALVEEAAAATEALKAQARRLAESVSVFRLGGG 504 AAS EQ SGIE++N+A+ QMD TQQNAALVE+AAAA ++++ QA RL +S+S+F+L G Sbjct: 460 AASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQG 519 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.127 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,159,317 Number of extensions: 41033 Number of successful extensions: 534 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 302 Number of HSP's successfully gapped: 71 Length of query: 507 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 418 Effective length of database: 1,198,455 Effective search space: 500954190 Effective search space used: 500954190 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)