BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0057.p (251 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC t... 491 e-140 gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC t... 298 3e-82 gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 295 2e-81 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 222 3e-59 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 213 2e-56 >gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 491 bits (1264), Expect = e-140, Method: Compositional matrix adjust. Identities = 248/251 (98%), Positives = 249/251 (99%) Query: 1 MSELVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLPAQGT 60 MSELVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLPAQGT Sbjct: 1 MSELVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLPAQGT 60 Query: 61 VRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQLA 120 VRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQLA Sbjct: 61 VRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQLA 120 Query: 121 TVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEILH 180 TVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEILH Sbjct: 121 TVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEILH 180 Query: 181 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGFG 240 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGFG Sbjct: 181 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGFG 240 Query: 241 KKLEAEVVADS 251 KK +AEVVA S Sbjct: 241 KKAQAEVVAAS 251 >gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 298 bits (763), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 149/241 (61%), Positives = 187/241 (77%), Gaps = 4/241 (1%) Query: 4 LVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLP----AQG 59 ++L+V+ L A YGKV AL D L L G I TVIGPNGAGKSTLLNA+MG LP A G Sbjct: 24 VLLEVSGLSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALPSGAAASG 83 Query: 60 TVRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQL 119 + +QG V + +E+RV G++LVPE+RELF+TM+VEDNLLLG ++R R ++ LDQ Sbjct: 84 RIAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGESGYLDQQ 143 Query: 120 ATVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEIL 179 V+ LFPRLKERR Q AGTLSGGERQMLA+GRA+MAKPQ+LMLDEPSLGLAP I +EIL Sbjct: 144 DFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITREIL 203 Query: 180 HIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGF 239 I+S+LR+ G++ LLVEQNARAALQ ADYGYVLE+G++ G + LA D +++++YLG Sbjct: 204 SIISQLRSTGVATLLVEQNARAALQVADYGYVLEMGEIVCAGPAGVLAEDSRIVESYLGV 263 Query: 240 G 240 G Sbjct: 264 G 264 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 295 bits (756), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 150/242 (61%), Positives = 186/242 (76%) Query: 1 MSELVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLPAQGT 60 M VL+V L A+YGKV+ L I L +E+G I TVIGPNGAGK+TLL+AIMGVLP++G Sbjct: 1 MGNKVLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLPSRGA 60 Query: 61 VRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQLA 120 + + G +E+ V AG+ LVPE+RELF+ M++EDNL+LG F+R R Q L Sbjct: 61 MAFDGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATLE 120 Query: 121 TVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEILH 180 V+ LFPRL+ERRSQQAGTLSGGERQMLA+GRA+MAKP+LLMLDEPSLGLAP IV+EI Sbjct: 121 EVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFR 180 Query: 181 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGFG 240 I++ELR G+S+LLVEQNARAALQ ADYGYVLE G + + G ++QLA D +VI+AYLG Sbjct: 181 IIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGLS 240 Query: 241 KK 242 K Sbjct: 241 GK 242 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 222 bits (565), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 117/241 (48%), Positives = 164/241 (68%), Gaps = 7/241 (2%) Query: 5 VLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVL-PAQGTVRY 63 +L ++ L A+YGKV+ LH I +++ +G + T+IG NGAGK+T + AI G++ P G V Sbjct: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 Query: 64 QGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQLAT-- 121 G+++ + G+A PE R +F+TMSV DNLLLG F R +A+P +A Sbjct: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFT--RARPKGDIAHDL 118 Query: 122 --VFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEIL 179 +LFPRLKER+SQ AGTLSGGE+QMLA+ RA+M P++++LDEPS+GLAP +V E+ Sbjct: 119 ERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVF 178 Query: 180 HIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGF 239 I+ L+ G+++LLVEQ A AAL ADYGYVLE GK+++ G + +L DP V AYLG Sbjct: 179 RIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGG 238 Query: 240 G 240 G Sbjct: 239 G 239 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 213 bits (541), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/244 (46%), Positives = 167/244 (68%), Gaps = 7/244 (2%) Query: 1 MSELVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLPA--- 57 M+ +L V QL +YG +QA+ I L++ G + T+IG NGAGK+T L AI G LPA Sbjct: 1 MTTNILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRV 60 Query: 58 QGTVRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQ-AQPL 116 +G + Y G+ ++ + V +A+VPE R +F+ MS+++NLL+G + Q A + Sbjct: 61 EGHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADI 120 Query: 117 DQLATVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVK 176 D+ F +FPRLKER +Q AGTLSGGE+QMLA+ RA+M+ P+LL+LDEPS+GL+P +V+ Sbjct: 121 DKW---FAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVE 177 Query: 177 EILHIVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAY 236 +I ++ + GI++LLVEQNA+ AL+ A GYV+E G +T+QG++ Q+ DP+V AY Sbjct: 178 KIFEVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAY 237 Query: 237 LGFG 240 LG G Sbjct: 238 LGEG 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 721,098 Number of extensions: 28590 Number of successful extensions: 505 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 341 Number of HSP's successfully gapped: 138 Length of query: 251 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 168 Effective length of database: 1,226,865 Effective search space: 206113320 Effective search space used: 206113320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)