BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0052.p
         (139 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313297|ref|YP_003777389.1| 4-hydroxybenzoyl-CoA thioestera...   285   1e-78

>gi|300313297|ref|YP_003777389.1| 4-hydroxybenzoyl-CoA thioesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 139

 Score =  285 bits (728), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/139 (99%), Positives = 139/139 (100%)

Query: 1   MSKTIIHPVRVEFGDCDPAGIVYFPNFFRWYDAASRNFFHECGVPPWRDTEKTRGIIGTP 60
           MSKTIIHPVRVEFGDCDPAGIVYFPNFFRWYDAASRNFFHECGVPPWRDTEKTRGIIGTP
Sbjct: 1   MSKTIIHPVRVEFGDCDPAGIVYFPNFFRWYDAASRNFFHECGVPPWRDTEKTRGIIGTP 60

Query: 61  VVDISSRFVRPATYGDRIEVHSTIVEWNDKTFVMQHEIKRDGELLCEGRDVRVFAIRHPD 120
           VVDISSRFVRPATYGDRIEVHS+IVEWNDKTFVMQHEIKRDGELLCEGRDVRVFAIRHPD
Sbjct: 61  VVDISSRFVRPATYGDRIEVHSSIVEWNDKTFVMQHEIKRDGELLCEGRDVRVFAIRHPD 120

Query: 121 DPARIKAIPIPADIREMCS 139
           DPARIKAIPIPADIREMCS
Sbjct: 121 DPARIKAIPIPADIREMCS 139


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.143    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 480,055
Number of extensions: 19105
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 63
Effective length of database: 1,260,010
Effective search space: 79380630
Effective search space used: 79380630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)