BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0050.p (473 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313295|ref|YP_003777387.1| acetyl-CoA acetyltransferase [H... 744 0.0 gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 207 2e-54 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 201 7e-53 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 185 5e-48 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 171 1e-43 >gi|300313295|ref|YP_003777387.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 417 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/391 (97%), Positives = 384/391 (98%) Query: 1 MTQAAFYSSFKDIWLVGGVRTPMVDYCTSFSQLSPTDMGIKVAREILARTGIDPADIGSV 60 M QAAFYSSFKDIWLVGGVRTPMVDYCTSFSQLSPTDMGIKVARE+LARTGIDPADIGSV Sbjct: 1 MAQAAFYSSFKDIWLVGGVRTPMVDYCTSFSQLSPTDMGIKVAREVLARTGIDPADIGSV 60 Query: 61 VAGNMAPGDAYQYMLPRHIGLYAGVPISTPAIMVQRICGTGFELIRQAGDQIERGYTETA 120 VAGNMAPGDAYQYMLPRHIGLYAGVPISTPAIMVQRICGTGFELIRQAGDQIERGYTE A Sbjct: 61 VAGNMAPGDAYQYMLPRHIGLYAGVPISTPAIMVQRICGTGFELIRQAGDQIERGYTEAA 120 Query: 121 LIVGSESMTRNPIAAFGHRSGFKLGAPVEFQDYMWEALVDPAPGITMPQTAENLAKKYSI 180 LIVGSESMTRNPIAAFGHRSGFKLGAPVEFQDYMWEALVDPAPGITMPQTAENLAKKY I Sbjct: 121 LIVGSESMTRNPIAAFGHRSGFKLGAPVEFQDYMWEALVDPAPGITMPQTAENLAKKYGI 180 Query: 181 TRAEVDEYAAYSFERALKAQAAGFHAGEIVPVINETFHLDGYNDRHIKLQGKLSEAATDT 240 TRAEVDEYAAYSFERALKAQAAGFHAGEIVPV+NETF LDGYNDRHIKLQGKLSEAA DT Sbjct: 181 TRAEVDEYAAYSFERALKAQAAGFHAGEIVPVVNETFRLDGYNDRHIKLQGKLSEAAADT 240 Query: 241 HPRPSPVEVLAKLRTLYPDGVQTGGNSSALVDAAAATIVASGDYVRRNDKAPLARVAAAA 300 HPRPSPVEVLAKLRTLYPDGVQTGGNSSALVDAAAATIVASGDYVRRNDKAPLARV AAA Sbjct: 241 HPRPSPVEVLAKLRTLYPDGVQTGGNSSALVDAAAATIVASGDYVRRNDKAPLARVVAAA 300 Query: 301 VAGVPPEIMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGIDRERLNV 360 VAGVPPEIMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGIDRERLNV Sbjct: 301 VAGVPPEIMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGIDRERLNV 360 Query: 361 NGGAIALGHPLAATGVRLSITAAREMNRRCA 391 NGGAIALGHPLAATGVRLSITAAREMNRR A Sbjct: 361 NGGAIALGHPLAATGVRLSITAAREMNRRGA 391 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 207 bits (526), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 135/386 (34%), Positives = 200/386 (51%), Gaps = 20/386 (5%) Query: 10 FKDIWLVGGVRTPMVDYCTSFSQLSPTDMGIKVAREILARTGIDPADIGSVVAGNMAPGD 69 D+ +V RT + + + S+++ D+G +V + +LA+TGI P I V+ G + Sbjct: 1 MDDVVIVAAQRTAIGKFGGALSKIAAADLGAQVIKALLAKTGIKPEAISEVILGQVLTAG 60 Query: 70 AYQYMLPRHIGLYAGVPISTPAIMVQRICGTGFELIRQAGDQIERGYTETALIVGSESMT 129 Q R + +G+P PA +V ++CG+G + ++ A I G + + G E+M+ Sbjct: 61 LGQNP-ARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENMS 119 Query: 130 RNPIAAFGHRSGFKLGAPVEFQDYMWEALVDPAPGITMPQTAENLAKKYSITRAEVDEYA 189 +P R GF++G + + L D M TAEN+AKK+ I+R E D +A Sbjct: 120 ASPHVLNNSRDGFRMGDAKLTDTMIVDGLWDVYNQYHMGITAENVAKKFEISREEQDAFA 179 Query: 190 AYSFERALKAQAAGFHAGEIVPVINETFHLDGYNDRHIKLQGKLSEAATDTH---PRPSP 246 A S +A AQ AG EIVP I+++GK DT Sbjct: 180 AASQNKAEAAQKAGKFKDEIVP---------------IEIKGKKETVVFDTDEFVKHGVT 224 Query: 247 VEVLAKLRTLYPD-GVQTGGNSSALVDAAAATIVASGDYVRRNDKAPLARVAAAAVAGVP 305 E LA LR + G T GN+S + D AAA +V S LA++ A + AG+ Sbjct: 225 AESLATLRPAFDKAGTVTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLD 284 Query: 306 PEIMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGIDRERLNVNGGAI 365 P IMG+GPVPA + L++ G T D+ EINEA AQ +AV +++G D ++NVNGGAI Sbjct: 285 PSIMGMGPVPASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAI 344 Query: 366 ALGHPLAATGVRLSITAAREMNRRCA 391 ALGHP+ A+G R+ +T EM RR A Sbjct: 345 ALGHPIGASGCRVLVTLLHEMVRRDA 370 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 201 bits (512), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 139/402 (34%), Positives = 206/402 (51%), Gaps = 26/402 (6%) Query: 10 FKDIWLVGGVRTPMVDYCTSFSQLSPTDMGIKVAREILART-GIDPADIGSVVAGNMAPG 68 KD+++ +RTP+ Y + + D+G R ++ R +D + V+ G Sbjct: 1 MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIYGCANQA 60 Query: 69 DAYQYMLPRHIGLYAGVPISTPAIMVQRICGTGFELIRQAGDQIERGYTETALIVGSESM 128 + R L AG+P P + R+CG+G + + A I+ G T+ + G ESM Sbjct: 61 GEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESM 120 Query: 129 TRNPIAAFGHRSGFKLGAPVEFQDYMW---EALVDPAPGI-TMPQTAENLAKKYSITRAE 184 TR P S F A ++ W AL+ G+ MP+TAEN+A + ++RA+ Sbjct: 121 TRAPFVMGKADSAFSRQAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRAD 180 Query: 185 VDEYAAYSFERALKAQAAGFHAGEIVPVINETFHLDGYNDRHIKLQGKLSEAATDTHPRP 244 D++A S +A AQA G A EIVPV+ + +G D HPR Sbjct: 181 QDQFAVRSQAKAAAAQANGTLAQEIVPVVIP------------QKKGDPITVTQDEHPRA 228 Query: 245 SPVEVLAKLR-TLYPDGVQTGGNSSALVDAAAATIVASGDYVRRNDKAPLARVAAAAVAG 303 + +E LA+L+ + PDG T GN+S + D A A ++AS + V + P AR+ A AG Sbjct: 229 TSMEALARLKGVVKPDGSVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAG 288 Query: 304 VPPEIMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGI--DRERLNVN 361 V P IMG+GP PA + +L + G+T+ + E+NEA +Q +AV RELG+ D R+N N Sbjct: 289 VAPRIMGMGPAPASKKVLAQLGMTIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPN 348 Query: 362 GGAIALGHPLAATGVRLSITAAREMNRR------CALLRGVG 397 GGAIALGHPL +G RL TA ++ R C + GVG Sbjct: 349 GGAIALGHPLGMSGARLVTTATYQLERTGGRYALCTMCIGVG 390 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 185 bits (470), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 143/394 (36%), Positives = 199/394 (50%), Gaps = 27/394 (6%) Query: 19 VRTPMVDYCTSFSQLSPTDMGIKVAREILART-GIDPADIGSVVAGNMAPGDAYQYMLPR 77 +RTP Y + + D+ R ++ R G+D + + ++ G + R Sbjct: 9 IRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAGEDNRNVAR 68 Query: 78 HIGLYAGVPISTPAIMVQRICGTGFELIRQAGDQIERGYTETALIVGSESMTRNPIAAFG 137 GL AG+PI+ P V R+CG+ + + A I+ G + + G ESMTR P Sbjct: 69 MAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTRAPFVMGK 128 Query: 138 HRSGFKLGAPVEFQDYMW---EALVDPAPGI-TMPQTAENLAKKYSITRAEVDEYAAYSF 193 S F A + W L+ GI +MP+TAEN+A + I RA+ D +A S Sbjct: 129 AESAFARSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFQINRADQDAFALRSQ 188 Query: 194 ERALKAQAAGFHAGEIVPVINETFHLDGYNDRHIKLQGKLSEAATDTHPRP-SPVEVLAK 252 +R AQAAGF AGEI P+ + +G TD HPRP + + LAK Sbjct: 189 QRWAAAQAAGFFAGEIAPLTIP------------QKKGDPLVVTTDEHPRPDTTLATLAK 236 Query: 253 LR-TLYPDGVQTGGNSSALVDAAAATIVASGDYVRRNDKAPLARVAAAAVAGVPPEIMGI 311 L+ + PDG T GN+S + D A A ++AS P ARV A AGV P IMG Sbjct: 237 LKGVVRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGF 296 Query: 312 GPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGI--DRERLNVNGGAIALGH 369 GP PA+R +L + GLT+A + E+NEA AQ +AV R+LG+ D +N NGGAIA+GH Sbjct: 297 GPAPAVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGH 356 Query: 370 PLAATGVRLSITAAREMNRR------CALLRGVG 397 PL A+G RL TA ++ R C + GVG Sbjct: 357 PLGASGARLVTTAINQLERSGGRYALCTMCIGVG 390 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 171 bits (433), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 133/385 (34%), Positives = 197/385 (51%), Gaps = 20/385 (5%) Query: 10 FKDIWLVGGVRTPMVDYCTS-FSQLSPTDMGIKVAREILART-GIDPADIGSVVAGNMAP 67 +D ++V RTP+ F P D+ ++ + +A+ G+DP I + G P Sbjct: 5 LQDAYIVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVGCSFP 64 Query: 68 GDAYQYMLPRHIGLYAGVPISTPAIMVQRICGTGFELIRQAGDQIERGYTETALIVGSES 127 A + R+ L AG+P + + + R C +G I A D+I G + + G+ES Sbjct: 65 EGAQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAGAES 124 Query: 128 MTRNPIAAFGHRSGFKLGAPVEFQDYMWEALVDPAPGITMPQTAENLAKKYSITRAEVDE 187 M+ P+ F H S + A F+D V A G+ + TAE +A+++ ++R DE Sbjct: 125 MSMVPMMGF-HPS-ININA---FKDEN----VGMAYGMGL--TAEKVAQQWKVSREAQDE 173 Query: 188 YAAYSFERALKAQAAGFHAGEIVPV-INETFHLDGYNDRHIKLQGKLSEAATDTHPRP-S 245 ++ S ++A+ AQ AG A E+ I E F N ++ K + D PR S Sbjct: 174 FSLASHQKAIAAQEAGEFADEMTSFEIVERFP----NLATGEIDVKTRTVSLDEGPRADS 229 Query: 246 PVEVLAKLRTLYP-DGVQTGGNSSALVDAAAATIVASGDYVRRNDKAPLARVAAAAVAGV 304 + LAKL+ ++ G T GNSS D A A I+ S +++ + PLAR + AV GV Sbjct: 230 NLAALAKLKPVFAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRGV 289 Query: 305 PPEIMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGIDRERLNVNGGA 364 PPEIMGIGP AI L+ GLT I E+NEA AQ +AV +LG+D ++N GGA Sbjct: 290 PPEIMGIGPKEAIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGLDPSKVNPMGGA 349 Query: 365 IALGHPLAATGVRLSITAAREMNRR 389 IALGHPL ATG + T + R+ Sbjct: 350 IALGHPLGATGAIRAATTIHALRRK 374 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,490,490 Number of extensions: 62175 Number of successful extensions: 233 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 216 Number of HSP's successfully gapped: 6 Length of query: 473 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 384 Effective length of database: 1,198,455 Effective search space: 460206720 Effective search space used: 460206720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)