BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0044.p (312 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313290|ref|YP_003777382.1| IclR family transcription regul... 521 e-149 gi|300313272|ref|YP_003777364.1| transcription regulator protein... 197 1e-51 gi|300313063|ref|YP_003777155.1| transcription regulator protein... 164 9e-42 gi|300310493|ref|YP_003774585.1| transcription regulator protein... 151 8e-38 gi|300313062|ref|YP_003777154.1| IclR family transcription regul... 140 9e-35 >gi|300313290|ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 521 bits (1341), Expect = e-149, Method: Compositional matrix adjust. Identities = 259/260 (99%), Positives = 260/260 (100%) Query: 53 LTIAQEIDALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLK 112 +TIAQEIDALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLK Sbjct: 1 MTIAQEIDALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLK 60 Query: 113 QLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEV 172 QLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEV Sbjct: 61 QLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEV 120 Query: 173 LYVARSAASRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVV 232 LYVARSAASRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVV Sbjct: 121 LYVARSAASRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVV 180 Query: 233 SQKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQM 292 SQKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQM Sbjct: 181 SQKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQM 240 Query: 293 EEEILPVLLRGAQELSVLLP 312 EEEILPVLLRGAQELSVLLP Sbjct: 241 EEEILPVLLRGAQELSVLLP 260 >gi|300313272|ref|YP_003777364.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 197 bits (500), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 108/246 (43%), Positives = 150/246 (60%) Query: 66 SFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADSDVNNFS 125 + L +GL VI AF R LTIA+++Q TG+ RAA RR L TL LGY D FS Sbjct: 21 DLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKTFS 80 Query: 126 LRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVARSAASRVMS 185 L P +L LG SYL S L QP L ++ +LGE+ S VLD +++ VA +A +++S Sbjct: 81 LTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQLVS 140 Query: 186 VALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILAGVR 245 L G+R+PAYCT+ GR +LA+LP QL A + + A+T T+ +RL +A R Sbjct: 141 TTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEAITAHTITDVERLGLEIARAR 200 Query: 246 ANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEILPVLLRGAQ 305 GYA++D+ELE+GLR++AVPVR G V+AA+N+ A R+ + M E LP +L+ Sbjct: 201 VQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAGRMKLEDMVERCLPAMLKIQV 260 Query: 306 ELSVLL 311 EL LL Sbjct: 261 ELGALL 266 >gi|300313063|ref|YP_003777155.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 164 bits (415), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 141/247 (57%) Query: 61 ALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADSD 120 L+ ++ L +GL ++ AF + +T AQ++ +TG+ R A RR L TL+ LGY S+ Sbjct: 23 GLSRRDWIAGLEKGLLILEAFDFDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSE 82 Query: 121 VNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVARSAA 180 F+L P++L +G+SY S PL QP+L I+ GE+ +VLD +++++AR+ A Sbjct: 83 GKTFALTPRVLKVGWSYFDSAPLPRILQPFLQQITGQTGEAVYASVLDGWDLVFIARNGA 142 Query: 181 SRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDI 240 +RVM+ G+R+PA S G ML+ LPE Q++ + + T T+ +L + Sbjct: 143 TRVMTTGFVLGARVPAQLASPGIVMLSALPEQQVRDWLATCAMTPFTPHTITDPDQLYAL 202 Query: 241 LAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEILPVL 300 +A R GYAV++++L+ G+R IAVP++ V+ AL++ A + Q ILP L Sbjct: 203 IAQARQLGYAVVEQQLQTGVRGIAVPLKNRHAKVIGALSLSLPMAAEAREQTLARILPAL 262 Query: 301 LRGAQEL 307 + A L Sbjct: 263 QQAANAL 269 >gi|300310493|ref|YP_003774585.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 151 bits (381), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 147/251 (58%), Gaps = 2/251 (0%) Query: 60 DALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGY--A 117 D +D F SL +GLAV+RAF+ R++T+ ++ TGI +++ +R +HTL+ LGY Sbjct: 6 DTASDLLFNQSLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICK 65 Query: 118 DSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVAR 177 + L PK++ +GY+YL++ L A P+L+ ++ GE+ +L D E++YVAR Sbjct: 66 HPKTRRYQLTPKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYVAR 125 Query: 178 SAASRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRL 237 AS+ + + + GSR+P YCT+ GRA L+ L ++ +A + + T T + + Sbjct: 126 FVASKFIPIHMPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDI 185 Query: 238 RDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEIL 297 +LA R G+A EEL +G SIA PV + +A+++V A +R SV + E+++ Sbjct: 186 MQLLAASRERGFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEAEKKLG 245 Query: 298 PVLLRGAQELS 308 P++L A+ +S Sbjct: 246 PLVLECARAIS 256 >gi|300313062|ref|YP_003777154.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 140 bits (354), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 126/223 (56%) Query: 66 SFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADSDVNNFS 125 + L +G VI AF L+ ++++++ G+ R+A RR L TL G A SD F Sbjct: 15 DLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAASDGKKFW 74 Query: 126 LRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVARSAASRVMS 185 L P++L LG SYL S + + P+L +++ L ES + ++LD E++YV R A+++++ Sbjct: 75 LMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAAQLVN 134 Query: 186 VALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILAGVR 245 G+RLPAY T+ GR +L + +++AY ++V L T + + L + +R Sbjct: 135 AGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAALFQEILTMR 194 Query: 246 ANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVS 288 GY + + + E+G+R IA+ V+ +G V+ AL+V + A S Sbjct: 195 RQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACS 237 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.129 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 697,924 Number of extensions: 25543 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 10 Length of query: 312 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 227 Effective length of database: 1,217,395 Effective search space: 276348665 Effective search space used: 276348665 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)