BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0038.p (257 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 519 e-148 gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t... 179 3e-46 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 177 1e-45 gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPa... 176 2e-45 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 172 2e-44 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 519 bits (1336), Expect = e-148, Method: Compositional matrix adjust. Identities = 257/257 (100%), Positives = 257/257 (100%) Query: 1 MSKQAHQADTTLRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGG 60 MSKQAHQADTTLRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGG Sbjct: 1 MSKQAHQADTTLRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGG 60 Query: 61 FAPSSGRVWFGGEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYK 120 FAPSSGRVWFGGEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYK Sbjct: 61 FAPSSGRVWFGGEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYK 120 Query: 121 WYQTVASQTEVVDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDE 180 WYQTVASQTEVVDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDE Sbjct: 121 WYQTVASQTEVVDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDE 180 Query: 181 PAAGIPSAESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEI 240 PAAGIPSAESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEI Sbjct: 181 PAAGIPSAESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEI 240 Query: 241 AADPRVKEVYLGEAEHA 257 AADPRVKEVYLGEAEHA Sbjct: 241 AADPRVKEVYLGEAEHA 257 >gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 179 bits (453), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 154/245 (62%), Gaps = 7/245 (2%) Query: 12 LRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSSGRVWFG 71 L+ ++KR+G F A + I+L G H++IGPNGAGKTT + LTG + G + Sbjct: 6 LQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILVE 65 Query: 72 GEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQ----YKWYQTVAS 127 GE++ LP + RV++G+ R+FQ+ +LF L+V E++ LA Q R L +K + ++ Sbjct: 66 GEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRAEQFSA 125 Query: 128 QTEVVDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDEPAAGIPS 187 + DE +A L+ +AQ A + L++G+QR +E+ +A+A +PKV+ LDEP +G+ Sbjct: 126 ACALADELLARLSLQAVAQRACA---ELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMGI 182 Query: 188 AESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADPRVK 247 + E+ ++I L R+ T+V IEH+M +V ++RITV+ G++L +G PAEI +D RV+ Sbjct: 183 DDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDERVR 242 Query: 248 EVYLG 252 YLG Sbjct: 243 RAYLG 247 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 177 bits (448), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 148/244 (60%) Query: 9 DTTLRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSSGRV 68 D L T L+K + F A S ++L G HALIGPNGAGKTT NLLT P+SG++ Sbjct: 3 DVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQI 62 Query: 69 WFGGEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTVASQ 128 F G DIT ++G+ R+FQI+ +F ++VLE+V + +Q + G + +++ S Sbjct: 63 LFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGESL 122 Query: 129 TEVVDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDEPAAGIPSA 188 ++ + AM LL + L A++ T +L YG++R +EIA LA +P+++LLDEP G+ Sbjct: 123 KQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHE 182 Query: 189 ESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADPRVKE 248 + + +I ++ TI+ +EH+M ++ +RI+VL G +L EG+ E++ +P+V E Sbjct: 183 DVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQVME 242 Query: 249 VYLG 252 Y+G Sbjct: 243 AYMG 246 >gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 176 bits (445), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 97/244 (39%), Positives = 147/244 (60%) Query: 12 LRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSSGRVWFG 71 L +GL K +G A D+ L A G HA+IGPNGAGKTT ++LL+G A +G + Sbjct: 10 LVVKGLKKNYGGLAATRDVDLEIAAGQVHAIIGPNGAGKTTLLSLLSGALAADAGEIHLF 69 Query: 72 GEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTVASQTEV 131 G+ + + ARV G+ R+FQI ++F L+VLE++ +A+Q + Y ++ A Sbjct: 70 GQPMHGHAEQARVAAGLVRSFQITSVFDELSVLENLQVAVQRGQHRSYGFFHASAGDRAA 129 Query: 132 VDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDEPAAGIPSAESR 191 + AM + + L + + L+ L++G +R +++ LA+A P+VLL+DEP AG+ ES Sbjct: 130 REAAMTVARRVGLEKVVHQLSSQLSHGARRRLDVGLAIACSPRVLLMDEPMAGMGHEESG 189 Query: 192 ELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADPRVKEVYL 251 ++ +I L E+T+V +EHDM VF A+R+TVLV G VL G+ EI A+ VK YL Sbjct: 190 DMIALIQSLKEELTVVLVEHDMEAVFALADRMTVLVQGAVLATGSVDEIRANAEVKLAYL 249 Query: 252 GEAE 255 GE E Sbjct: 250 GEEE 253 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 172 bits (436), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 102/252 (40%), Positives = 144/252 (57%), Gaps = 10/252 (3%) Query: 12 LRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSSGRVWFG 71 L+ +SK +G ++ G LIGPNGAGKTT NL+TG SSG + F Sbjct: 3 LQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRFN 62 Query: 72 GEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTVAS---- 127 +DI A+ H +RG+ RTFQ +F +T+LE+VV+ + + L Y + + Sbjct: 63 DDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDH--LNYGVASMLLNLGGF 120 Query: 128 ---QTEVVDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDEPAAG 184 + E + A+ LL+ ++L +A+ L +L+YG+QR +E A ALAT+PK+LLLDEP AG Sbjct: 121 RNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 Query: 185 IPSAESRELF-EVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAAD 243 + AE EL E++ R TI IEHDM V ERI VL GK++ EGTP +I + Sbjct: 181 MNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 Query: 244 PRVKEVYLGEAE 255 V E YLG+ E Sbjct: 241 QEVIEAYLGKEE 252 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 797,380 Number of extensions: 33474 Number of successful extensions: 534 Number of sequences better than 1.0e-08: 126 Number of HSP's gapped: 334 Number of HSP's successfully gapped: 132 Length of query: 257 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 174 Effective length of database: 1,226,865 Effective search space: 213474510 Effective search space used: 213474510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)