BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0027.p (266 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313272|ref|YP_003777364.1| transcription regulator protein... 529 e-152 gi|300313063|ref|YP_003777155.1| transcription regulator protein... 201 5e-53 gi|300313062|ref|YP_003777154.1| IclR family transcription regul... 200 1e-52 gi|300313290|ref|YP_003777382.1| IclR family transcription regul... 197 1e-51 gi|300310493|ref|YP_003774585.1| transcription regulator protein... 132 3e-32 >gi|300313272|ref|YP_003777364.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 529 bits (1363), Expect = e-152, Method: Compositional matrix adjust. Identities = 264/266 (99%), Positives = 266/266 (100%) Query: 1 MQEERIDEEPGDADEGPLKRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAAR 60 MQEERIDEEPGDADEGPLKRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAAR Sbjct: 1 MQEERIDEEPGDADEGPLKRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAAR 60 Query: 61 RYLITLTHLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCG 120 RYLITLTHLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCG Sbjct: 61 RYLITLTHLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCG 120 Query: 121 VLDHDQLVCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLEAILARAQPEA 180 VLDHDQLVCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQL+AILARAQPEA Sbjct: 121 VLDHDQLVCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEA 180 Query: 181 ITAHTITDVERLGLEIARARVRGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAG 240 ITAHTITDVERLGLEIARARV+GYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAG Sbjct: 181 ITAHTITDVERLGLEIARARVQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAG 240 Query: 241 RMKLEDMVERCLPAMLKIQVELGALL 266 RMKLEDMVERCLPAMLKIQVELGALL Sbjct: 241 RMKLEDMVERCLPAMLKIQVELGALL 266 >gi|300313063|ref|YP_003777155.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 201 bits (511), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 115/261 (44%), Positives = 161/261 (61%), Gaps = 8/261 (3%) Query: 3 EERIDEEPGDAD-------EGPL-KRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGL 54 ER P D EG L +RD +AGLEKGL ++EAFD + R+T A+VA TGL Sbjct: 2 NERDKNGPADDSREVCEPTEGGLSRRDWIAGLEKGLLILEAFDFDNQRMTSAQVAARTGL 61 Query: 55 TRAAARRYLITLTHLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLG 114 +R AARRYL+TL HLGY+ + KTF+LTP VL++G SY SA LPRI+QP L ++ G Sbjct: 62 SRTAARRYLLTLEHLGYLHSEGKTFALTPRVLKVGWSYFDSAPLPRILQPFLQQITGQTG 121 Query: 115 EAASCGVLDHDQLVCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLEAILA 174 EA VLD LV +A A ++++T G RVPA + G ++L+ LP Q+ LA Sbjct: 122 EAVYASVLDGWDLVFIARNGATRVMTTGFVLGARVPAQLASPGIVMLSALPEQQVRDWLA 181 Query: 175 RAQPEAITAHTITDVERLGLEIARARVRGYALVDQELELGLRTMAVPVRNFRGEVVAAMN 234 T HTITD ++L IA+AR GYA+V+Q+L+ G+R +AVP++N +V+ A++ Sbjct: 182 TCAMTPFTPHTITDPDQLYALIAQARQLGYAVVEQQLQTGVRGIAVPLKNRHAKVIGALS 241 Query: 235 ISVHAGRMKLEDMVERCLPAM 255 +S+ E + R LPA+ Sbjct: 242 LSLPMAAEAREQTLARILPAL 262 >gi|300313062|ref|YP_003777154.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 200 bits (509), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 108/250 (43%), Positives = 152/250 (60%), Gaps = 2/250 (0%) Query: 6 IDEEPGDADEGPLKRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLIT 65 ID+ P D D KRDL+ GL KG VI AFD + +L+ +EVA+ GLTR+AARRYL+T Sbjct: 2 IDQSPVDLD--IQKRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLT 59 Query: 66 LTHLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHD 125 L H G D K F L P +L LGQSYL SAR+PR V P L RL L E+ + +LD D Sbjct: 60 LVHTGMAASDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGD 119 Query: 126 QLVCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLEAILARAQPEAITAHT 185 ++V V V+A QLV+ +PGTR+PAY T GR+LL A+++A L R T Sbjct: 120 EIVYVTRVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMA 179 Query: 186 ITDVERLGLEIARARVRGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAGRMKLE 245 +TD L EI R +GY + + + E+G+R +A+ V+N G V+ A++++ + E Sbjct: 180 MTDKAALFQEILTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSRE 239 Query: 246 DMVERCLPAM 255 + + R +PA+ Sbjct: 240 EAIARGVPAL 249 >gi|300313290|ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 197 bits (500), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 108/246 (43%), Positives = 151/246 (61%) Query: 21 DLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKTFS 80 + L +GL VI AF R LTIA+++Q TG+ RAA RR L TL LGY D FS Sbjct: 14 SFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADSDVNNFS 73 Query: 81 LTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQLVS 140 L P +L LG SYL S L QP L ++ +LGE+ S VLD +++ VA +A +++S Sbjct: 74 LRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVARSAASRVMS 133 Query: 141 TTLQPGTRVPAYCTANGRILLANLPPAQLEAILARAQPEAITAHTITDVERLGLEIARAR 200 L G+R+PAYCT+ GR +LA+LP QL+A + + A+T T+ +RL +A R Sbjct: 134 VALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILAGVR 193 Query: 201 VRGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAGRMKLEDMVERCLPAMLKIQV 260 GYA++D+ELE+GLR++AVPVR G V+AA+N+ A R+ + M E LP +L+ Sbjct: 194 ANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEILPVLLRGAQ 253 Query: 261 ELGALL 266 EL LL Sbjct: 254 ELSVLL 259 >gi|300310493|ref|YP_003774585.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 132 bits (333), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 133/235 (56%), Gaps = 2/235 (0%) Query: 25 GLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKT--FSLT 82 LEKGL V+ AF+ + +T+ +VA TG+++++A+R + TL LGY+ KT + LT Sbjct: 16 SLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICKHPKTRRYQLT 75 Query: 83 PMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQLVSTT 142 P V+ +G +YL + L + P L LA GE + ++V VA A + + Sbjct: 76 PKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYVARFVASKFIPIH 135 Query: 143 LQPGTRVPAYCTANGRILLANLPPAQLEAILARAQPEAITAHTITDVERLGLEIARARVR 202 + G+R+P YCTA+GR L+ L P + +AIL ++ T HT TDVE + +A +R R Sbjct: 136 MPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDIMQLLAASRER 195 Query: 203 GYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAGRMKLEDMVERCLPAMLK 257 G+A +EL LG ++A PV N + VA++++ R +E+ ++ P +L+ Sbjct: 196 GFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEAEKKLGPLVLE 250 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 812,632 Number of extensions: 33153 Number of successful extensions: 133 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 7 Length of query: 266 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 182 Effective length of database: 1,222,130 Effective search space: 222427660 Effective search space used: 222427660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)