BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0022.p (176 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313267|ref|YP_003777359.1| response regulator transcriptio... 345 1e-96 gi|300312037|ref|YP_003776129.1| sensory transduction regulatory... 93 1e-20 gi|300312512|ref|YP_003776604.1| sensory transduction regulatory... 89 2e-19 gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790... 60 1e-10 gi|300310718|ref|YP_003774810.1| phosphate regulon two-component... 54 7e-09 >gi|300313267|ref|YP_003777359.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 188 Score = 345 bits (885), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 174/176 (98%), Positives = 174/176 (98%) Query: 1 MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI 60 MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI Sbjct: 13 MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI 72 Query: 61 LLESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGEREALDAGATAYLPKPIDGER 120 LLESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGEREALDAGATAYLPKPIDGER Sbjct: 73 LLESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGEREALDAGATAYLPKPIDGER 132 Query: 121 YARCVVEMVERWCDVSEAAAPVQEALTRESLDGLPGHPRRRRDDLVPPGGKRSRLS 176 YARCVVEMVERWCDVSEAAAPVQEALTRESLDGLPGHPRRRRDDLV PGGKR RLS Sbjct: 133 YARCVVEMVERWCDVSEAAAPVQEALTRESLDGLPGHPRRRRDDLVAPGGKRWRLS 188 >gi|300312037|ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 140 Score = 92.8 bits (229), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/134 (45%), Positives = 76/134 (56%), Gaps = 2/134 (1%) Query: 1 MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGR-RSGDCATPSL 59 MS PSI+M+DPSPE+ ELARF LWR L CAF +D A + L + + R+ P L Sbjct: 1 MSRPSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCL 60 Query: 60 ILLESDMECGDGLELLRELRASSHLAEAPVVVF-PSHDTEGEREALDAGATAYLPKPIDG 118 ILLE + +GLELL LRA +H PVV+F S D A AGA YL KP+D Sbjct: 61 ILLEPRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDA 120 Query: 119 ERYARCVVEMVERW 132 + V + V RW Sbjct: 121 RAFMELVSQTVRRW 134 >gi|300312512|ref|YP_003776604.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/128 (40%), Positives = 70/128 (54%), Gaps = 1/128 (0%) Query: 1 MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI 60 M P I+MI+ + EA ELARFALWR+ HC + + A LL R D P LI Sbjct: 1 MRPPIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARLPDLI 60 Query: 61 LLESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGER-EALDAGATAYLPKPIDGE 119 LL+ M +G++ + ++A PVVVFP D E + L+AGA+AYL KP Sbjct: 61 LLDPGMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAP 120 Query: 120 RYARCVVE 127 +Y + VVE Sbjct: 121 QYMQAVVE 128 >gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790 [Herbaspirillum seropedicae SmR1] Length = 144 Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 2 SFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLIL 61 P I++ID +A E ARFALWR+ L C D A LL+ P+LIL Sbjct: 6 QLPRILIIDADLDAIETARFALWRSHLSCRIEWFDDAELANASLLTQALCQLRDQPTLIL 65 Query: 62 LE-SDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGEREALDAGATAYLPKPIDGER 120 L+ + +G ELLR L LA+ P+V+F + + A Y KP Sbjct: 66 LDPRNFRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFAAEQDNRIWYAAKPARPAD 125 Query: 121 YARCVVEMVER 131 Y V V++ Sbjct: 126 YMELVTRCVQQ 136 >gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 53.9 bits (128), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 10/115 (8%) Query: 3 FPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLILL 62 P I+M++ P AEL RF + AG A DVA AR+ + + P ++LL Sbjct: 5 LPHILMVEDEPSIAELLRFTMQGAGF--ATTIATDVAQARKHIAE-------SLPHVVLL 55 Query: 63 ESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGER-EALDAGATAYLPKPI 116 + + GL LL ELR A PV++ + E ++ + L+ GA Y+ KP Sbjct: 56 DWMLPDSSGLVLLNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPF 110 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 599,372 Number of extensions: 24403 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 5 Length of query: 176 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 97 Effective length of database: 1,245,805 Effective search space: 120843085 Effective search space used: 120843085 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)