BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0014.p (247 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313259|ref|YP_003777351.1| ABC transporter ATPase [Herbasp... 489 e-140 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 155 3e-39 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 147 9e-37 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 147 1e-36 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 146 1e-36 >gi|300313259|ref|YP_003777351.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 247 Score = 489 bits (1260), Expect = e-140, Method: Compositional matrix adjust. Identities = 247/247 (100%), Positives = 247/247 (100%) Query: 1 MAASSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGG 60 MAASSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGG Sbjct: 1 MAASSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGG 60 Query: 61 EIDLDGEPISRLAIHKRATLGLSYLPQEASVFRKLTVEDNIRAVLELRQEDGKPLSRDEI 120 EIDLDGEPISRLAIHKRATLGLSYLPQEASVFRKLTVEDNIRAVLELRQEDGKPLSRDEI Sbjct: 61 EIDLDGEPISRLAIHKRATLGLSYLPQEASVFRKLTVEDNIRAVLELRQEDGKPLSRDEI 120 Query: 121 EGRLNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVI 180 EGRLNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVI Sbjct: 121 EGRLNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVI 180 Query: 181 EIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVY 240 EIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVY Sbjct: 181 EIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVY 240 Query: 241 LGEHFRM 247 LGEHFRM Sbjct: 241 LGEHFRM 247 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 155 bits (392), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 142/248 (57%), Gaps = 10/248 (4%) Query: 6 LVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGEIDLD 65 L + + K++G QV++ V+ VR GE+ GL+GPNGAGKTT F +I GL+ + G I + Sbjct: 3 LQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRFN 62 Query: 66 GEPISRLAIHKRATLGLSYLPQEASVFRKLTVEDNIRAVLE----------LRQEDGKPL 115 + I +A HK G++ Q VF+++T+ +N+ + L G Sbjct: 63 DDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFRN 122 Query: 116 SRDEIEGRLNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGID 175 + E R LL ++++ A SLS GE+R++E ARALAT P+ +LLDEP AG++ Sbjct: 123 AEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGMN 182 Query: 176 PIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANES 235 P E+ + +K+RG + + +H++R +G+C+R ++N G ++A G P++I N+ Sbjct: 183 PAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQE 242 Query: 236 VRRVYLGE 243 V YLG+ Sbjct: 243 VIEAYLGK 250 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 147 bits (371), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 137/237 (57%), Gaps = 10/237 (4%) Query: 1 MAASSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGG 60 M+ L V+GL Y ++ + +E+R+GEVV L+G NGAGK+T+ ++GL+ G Sbjct: 1 MSQCLLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQG 60 Query: 61 EIDLDGEPISRLAIHKRATLGLSYLPQEASVFRKLTVEDNIRAVLELRQEDGKPLSRDEI 120 +I L G I +LA H+RA LGL Y+P++ +F +L+V +N+ E G+ R Sbjct: 61 QIRLAGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENL--------ETGRQPPRPGA 112 Query: 121 EGRLNNLLHEL--QIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIA 178 L EL + + + +SGGE++ + IAR L +PR +LLDEP G+ P+ Sbjct: 113 PHWTPQALFELFPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVI 172 Query: 179 VIEIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANES 235 V ++ +++ LK GI +L+ + N+ +CDR Y+++QG ++A+G P + A++ Sbjct: 173 VEQMAAMIQELKRSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAAGTPASLQAHQQ 229 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 147 bits (370), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 143/252 (56%), Gaps = 10/252 (3%) Query: 1 MAASSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGG 60 M+ + L +R + K +G Q + V + + G++ GL+GPNGAGKTT F +I GL D G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 61 EIDLDGEPISRLAIHKRATLGLSYLPQEASVFRKLTVEDNIRAVLELRQEDG-------K 113 +LDG+P S A H+ A G++ Q +F ++TV +N+ +R + Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 120 Query: 114 PLSRDE---IEGRLNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEP 170 +R+E I + LL + I + + A LS G++RR+EIARALATDP+ + LDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 171 FAGIDPIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEI 230 AG++ + ++ ++ ++ G +L+ +H+V+ +G+C+R +++ G +A G P ++ Sbjct: 181 AAGMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV 240 Query: 231 IANESVRRVYLG 242 N +V YLG Sbjct: 241 QKNPAVIEAYLG 252 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 146 bits (369), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 84/252 (33%), Positives = 142/252 (56%), Gaps = 10/252 (3%) Query: 1 MAASSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGG 60 M+ + L +R + K +G Q + V + + G++ GL+GPNGAGKTT F +I GL D G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 61 EIDLDGEPISRLAIHKRATLGLSYLPQEASVFRKLTVEDNIRAVLELRQEDG-------K 113 +LDG+P S A H+ A G++ Q +F ++TV +N+ +R Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRH 120 Query: 114 PLSRDE---IEGRLNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEP 170 +R+E I + LL + I + + A LS G++RR+EIARALATDP+ + LDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 171 FAGIDPIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEI 230 AG++ + ++ ++ ++ G +L+ +H+V+ +G+C+R +++ G +A G P ++ Sbjct: 181 AAGMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV 240 Query: 231 IANESVRRVYLG 242 N +V YLG Sbjct: 241 QKNPAVIEAYLG 252 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.139 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 767,877 Number of extensions: 33834 Number of successful extensions: 519 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 316 Number of HSP's successfully gapped: 152 Length of query: 247 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 164 Effective length of database: 1,226,865 Effective search space: 201205860 Effective search space used: 201205860 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)